View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3878_low_27 (Length: 240)
Name: NF3878_low_27
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5001720 - 5001499
Alignment:
| Q |
1 |
cattaggtatatggatattctcacatatatgttcttcaacgtgcaatttttcatccagtgtgtaatttctaactcacttgacttgcaacaatcttcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5001720 |
cattaggtatatggatattctcacatatatgttcttcaacgtgcaatttttcatccggtgtgtaatttctagctcacttgacttgcaacaatctccactc |
5001621 |
T |
|
| Q |
101 |
atatgagagtctctcacatcttatatgtgtaccattgttattactaagtgagcacaccccatgactacactgttagaaatactttcaattaaaggattca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5001620 |
atatgcgagtctctcacatcttatatgtgtaccattgttattactaagtgagcacaccccatgactacactgttagaaatactttcaattaaaggattca |
5001521 |
T |
|
| Q |
201 |
ataccaatatctcattaccgct |
222 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
5001520 |
ataccaatatcccattaccgct |
5001499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University