View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_33 (Length: 218)
Name: NF3878_low_33
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 9921555 - 9921739
Alignment:
| Q |
16 |
atactgctgcgtttctttttggacccccaatatctctaaggtcctataaatacatatttggtagttatctaccgatatacattatttttatacatctagt |
115 |
Q |
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| T |
9921555 |
atactgctgcgtttctttttggacccc-aatatctctaaggtcctataaatacatatttggtagttatctaccaatgtatattatttttatacatctagt |
9921653 |
T |
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| Q |
116 |
agataactatttgatgtgtatttaagggttcttaaagatagtaggggcataaggagaaaggtcatctatagattcttgaagaaaaa |
201 |
Q |
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| T |
9921654 |
agataactatttgatgtgtatttaagggttcttaaagatagtagggacataaggagaaagttcatctatagattcttgatgaaaaa |
9921739 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 36679464 - 36679397
Alignment:
| Q |
107 |
acatctagtagataactatttgatgtgtatttaagggttcttaaagatagtaggggcataaggagaaa |
174 |
Q |
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| T |
36679464 |
acatctaatagataactatctgatgtgtatttatggggtcttagagatattgggggcctaaagagaaa |
36679397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 36693079 - 36693012
Alignment:
| Q |
107 |
acatctagtagataactatttgatgtgtatttaagggttcttaaagatagtaggggcataaggagaaa |
174 |
Q |
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| T |
36693079 |
acatctaatagataactatctgatgtgtatttatggggtcttagagatattgggggcctaaagagaaa |
36693012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27124799 - 27124759
Alignment:
| Q |
39 |
cccccaatatctctaaggtcctataaatacatatttggtag |
79 |
Q |
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| T |
27124799 |
cccccaatatctttaaggtcctctaaatacatattcggtag |
27124759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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