View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_5 (Length: 531)
Name: NF3878_low_5
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 1965616 - 1966113
Alignment:
| Q |
1 |
cattacacattcttagactttcgaatgacttttaagtattggttgaccatggatgtgtaacttgcttgaataattgatttacacaagtgaatattgttgt |
100 |
Q |
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| T |
1965616 |
cattacacattcttagactttcgaatgacttttaagtattggttgaccatggatgtgtaacttgcttgaataattgatttacacaagtgaatattgttgt |
1965715 |
T |
|
| Q |
101 |
atatgcagattggacaaggggcatatagcagtgtgcataaagcccgtgatcttgaaactggtaaatatgtggctttgaagaaagttaggttttcaagtgg |
200 |
Q |
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| T |
1965716 |
atttgcagattggacaaggggcatatagcagtgtgcataaagcccgtgatcttgaaactggtaaatatgtggctttgaagaaagttaggttttcaagtgg |
1965815 |
T |
|
| Q |
201 |
agatgttgaaagtgtacgtttcatggcaagggaaatctatattttgcgtcaacttgaccatcctaacatcctcaaactcgaaggtcttgtcacatctaga |
300 |
Q |
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| T |
1965816 |
agatgttgaaagtgtacgtttcatggcaagggaaatctatattttgcgtcaacttgaccatcctaacatcctcaaactcgaaggtcttgtcacatctaga |
1965915 |
T |
|
| Q |
301 |
acttcaactagtttgtaccttgtttttgaatacatggatcatgaccttgctggactagctgctagacctggtgtcaagttcactgaaccacaggtatata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965916 |
acttcaactagtttgtaccttgtttttgaatacatggatcatgaccttgctggactagctgctagacctggtgtcaagttcactgaaccacaggtatata |
1966015 |
T |
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| Q |
401 |
gatatcatgctattgtttcctaaaatgttaataagaaattggataatggttcaaaacttgttgttaggctgcaaactttatattgcagacaaatgcag |
498 |
Q |
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| T |
1966016 |
gatatcatgctattgtttcctaaaatgttaataagaaattggataatggttcaaaacttgttgttaggctgcaaactttatattgcagacaaatgcag |
1966113 |
T |
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