View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_7 (Length: 464)
Name: NF3878_low_7
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 39299562 - 39299679
Alignment:
| Q |
336 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
435 |
Q |
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| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
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| Q |
436 |
tcccattcctctgttcat |
453 |
Q |
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| T |
39299662 |
tcccattcctctgttcat |
39299679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 39299363 - 39299471
Alignment:
| Q |
137 |
tgttcagcaccactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcatttt |
236 |
Q |
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| T |
39299363 |
tgttcagcagcactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcatttt |
39299462 |
T |
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| Q |
237 |
caccaccaa |
245 |
Q |
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| T |
39299463 |
caccaccaa |
39299471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 39299254 - 39299332
Alignment:
| Q |
28 |
ctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
106 |
Q |
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| T |
39299254 |
ctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
39299332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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