View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_10 (Length: 506)
Name: NF3879_high_10
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 186 - 492
Target Start/End: Original strand, 39242873 - 39243179
Alignment:
| Q |
186 |
taagagactttggtttcagaaaaagaattgagttgccagaagaaagaaaatcgccgtttgcgtggaataccactataagaaagtggggccgccaaacaaa |
285 |
Q |
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| T |
39242873 |
taagagactttggtttcagaaaaagaattgagttgccagaagaaagaaaatcgccgtttgcgtggaataccactataagaaagtggggccgccaaacaaa |
39242972 |
T |
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| Q |
286 |
gcagctgtccaaggaacctaacaattgaagttacattgtaattcatcatttaagttaacatcaaatatataagttaacaaggataagtattagtatatga |
385 |
Q |
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| T |
39242973 |
gcagctgtccaaggaacctaacaattgaagttacattgtaattcatcatttaagttaacatcaaatatataagttaacaaggataagtattagtatatga |
39243072 |
T |
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| Q |
386 |
gaattgaacttactctatcttcaaaattaatgcgtgattcctactcttttataacggtcaattatttcgctaccccttgtagatagctagcttgcataat |
485 |
Q |
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| T |
39243073 |
gaattgaacttactctatcttcaaaattaatgcgtgattcctactcttttataacggtcaattatttcgctaccccttgtagatagctagcttgcataat |
39243172 |
T |
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| Q |
486 |
gcatgat |
492 |
Q |
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||||||| |
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| T |
39243173 |
gcatgat |
39243179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 39242697 - 39242772
Alignment:
| Q |
19 |
tccccatcatttcttatatatat------acgtacttttataattaaaaccaaagattttgacactaaatttgggc |
88 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39242697 |
tccccatcatttcttatatatatacatatacgtacttttataattaaaaccaaagactttgacactaaatttgggc |
39242772 |
T |
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