View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_high_15 (Length: 473)

Name: NF3879_high_15
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_high_15
NF3879_high_15
[»] chr5 (7 HSPs)
chr5 (19-463)||(19434681-19435125)
chr5 (39-91)||(24309652-24309704)
chr5 (39-91)||(24363622-24363674)
chr5 (238-280)||(15439493-15439534)
chr5 (236-280)||(6513330-6513373)
chr5 (236-280)||(11849318-11849362)
chr5 (238-282)||(37728555-37728599)
[»] chr1 (5 HSPs)
chr1 (20-89)||(1695990-1696059)
chr1 (20-84)||(17187470-17187534)
chr1 (20-113)||(26656715-26656805)
chr1 (235-279)||(34487567-34487610)
chr1 (238-280)||(20110781-20110823)
[»] chr3 (4 HSPs)
chr3 (39-124)||(10923251-10923336)
chr3 (238-280)||(13076293-13076335)
chr3 (235-280)||(8875042-8875086)
chr3 (237-280)||(53057644-53057685)
[»] chr8 (5 HSPs)
chr8 (23-92)||(10599933-10600002)
chr8 (20-84)||(11766854-11766918)
chr8 (239-280)||(3503520-3503560)
chr8 (238-287)||(22167852-22167900)
chr8 (235-280)||(28888443-28888488)
[»] chr7 (3 HSPs)
chr7 (236-282)||(21691615-21691661)
chr7 (238-280)||(9761886-9761925)
chr7 (236-280)||(13138846-13138889)
[»] chr2 (5 HSPs)
chr2 (234-280)||(12264350-12264396)
chr2 (237-281)||(10899373-10899417)
chr2 (238-280)||(24415831-24415873)
chr2 (20-57)||(26673459-26673496)
chr2 (238-282)||(20319521-20319564)
[»] chr6 (4 HSPs)
chr6 (236-278)||(11704496-11704537)
chr6 (238-282)||(14101358-14101400)
chr6 (235-280)||(19687928-19687972)
chr6 (240-280)||(12347282-12347322)
[»] scaffold0340 (1 HSPs)
scaffold0340 (238-279)||(17240-17280)
[»] chr4 (1 HSPs)
chr4 (235-280)||(16631631-16631675)
[»] scaffold0011 (1 HSPs)
scaffold0011 (236-280)||(145319-145363)


Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 19434681 - 19435125
Alignment:
Q  19 taggcaaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaattccttgtaaattcaaggggactagacg 118  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  19434681 taggtaaggaaatctaggattagattgtcttagtattgttattgtaatcaaaatttgattatagtggaaaaatcccttgtaaatttaaggggactggacg 19434780  T
Q  119 taatctatggttgtggggtggagtaggataaatactttgtgttgtttcctatcctttatctcttttatttccgctgctatctattttctactatctacaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19434781 taatctatggttgtggggtggagtaggataaatattttgtgttgtttcctatcctttatctcttttatttccgctgctatctattttctagtatctacaa 19434880  T
Q  219 agtgaatcgaaatgcgaccaacacaattcaaacccctatttcttgtgtttttctcaccttcagacttaaccacgacaatgcgaaaaagatggtcagagtt 318  Q
    || |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  19434881 agagaattgaaatgcgaccaacacaattcaaacctctctttcttgtgtttttctcaccttcagacttaaccacgacaatgcgaaaaaggtggtcaaagtt 19434980  T
Q  319 gagtatcgattttcatcgattagcttagatggacgtgtttggttcactaacatgcaacttcaaaatgacgatcttgtcataatcatgttctctatatcta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||     
T  19434981 gagtatcgattttcatcgattagcttagatggacgtgtttggttcactaacatgaaacttcaaaatgacgatcatgccataatcatgttctctatatctg 19435080  T
Q  419 gttagtatagttccaagggatcaatcaacctagatcttacctttg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19435081 gttagtatagttccaagggatcaatcaacctagatcttacctttg 19435125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 24309652 - 24309704
Alignment:
Q  39 taggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaat 91  Q
    |||||||||||||| || || |||||||||| |||||||||| ||||||||||    
T  24309652 taggttgtcttagtattcttgttgtaatcaagatttgattattgtggaaaaat 24309704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 24363674 - 24363622
Alignment:
Q  39 taggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaat 91  Q
    |||||||||||||| || || |||||||||| |||||||||| ||||||||||    
T  24363674 taggttgtcttagtattcttgttgtaatcaagatttgattattgtggaaaaat 24363622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 15439534 - 15439493
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  15439534 aacacaattcaaccccc-atttcttgtgtttttctcaccttca 15439493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 6513330 - 6513373
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  6513330 ccaacacaattcaa-cccctccttcttgtgtttttctcaccttca 6513373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 11849318 - 11849362
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||    
T  11849318 ccaacacaattcaacccccactttcttgtgtttttcttaccttca 11849362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 37728599 - 37728555
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttcaga 282  Q
    |||||||||||| ||||   |||||||||||||||||||||||||    
T  37728599 aacacaattcaaccccccccttcttgtgtttttctcaccttcaga 37728555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 1696059 - 1695990
Alignment:
Q  20 aggcaaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaa 89  Q
    ||||||||||||||||||  |||||||||||||| | || ||||||||||||||||||||||||| ||||    
T  1696059 aggcaaggaaatctaggacaaggttgtcttagtggtattgttgtaatcaaaatttgattatagtgaaaaa 1695990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 17187534 - 17187470
Alignment:
Q  20 aggcaaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtg 84  Q
    |||||||||||| ||||   ||||||||||||||||||| |||||||||  ||||||||||||||    
T  17187534 aggcaaggaaatgtagggaaaggttgtcttagtgttgttgttgtaatcatgatttgattatagtg 17187470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 26656715 - 26656805
Alignment:
Q  20 aggcaaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaattccttgtaaattcaaggggact 113  Q
    |||||||||||| ||||   ||||||||||||| |||||   ||||| | |||||||||||||| ||||||||| ||| || ||||||||||||    
T  26656715 aggcaaggaaatatagggcaaggttgtcttagtcttgtt---gtaattagaatttgattatagttgaaaaattcgttggaagttcaaggggact 26656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 34487610 - 34487567
Alignment:
Q  235 accaacacaattcaaacccctatttcttgtgtttttctcaccttc 279  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  34487610 accaacacaattcaa-cccttatttcttgtgtttttctcaccttc 34487567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 20110781 - 20110823
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||| ||||  ||||||||||||||||||||||||    
T  20110781 aacacaattcaaccccccctttcttgtgtttttctcaccttca 20110823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 10923251 - 10923336
Alignment:
Q  39 taggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaattccttgtaaattcaaggggactagacgtaatct 124  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||| | ||  || ||| ||||||| |||||||    
T  10923251 taggttatcttagtgttgttattgtaatcaggatttgattatagtagaaaaattcctcgaaaggtcgaggagactagaagtaatct 10923336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 13076335 - 13076293
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||| ||||  ||||||||||||||||||||||||    
T  13076335 aacacaattcaaccccccctttcttgtgtttttctcaccttca 13076293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 8875042 - 8875086
Alignment:
Q  235 accaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  8875042 accaacacaattcaa-cccctccttcttgtgtttttctcaccttca 8875086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 53057644 - 53057685
Alignment:
Q  237 caacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  53057644 caacacaattcaaccccct--ttcttgtgtttttctcaccttca 53057685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 10600002 - 10599933
Alignment:
Q  23 caaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtggaaaaatt 92  Q
    |||||||||||||||  ||||||||||||| ||||| ||||||  |  ||||||||||||||||||||||    
T  10600002 caaggaaatctaggacaaggttgtcttagtattgttgttgtaagtaggatttgattatagtggaaaaatt 10599933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 11766918 - 11766854
Alignment:
Q  20 aggcaaggaaatctaggattaggttgtcttagtgttgttattgtaatcaaaatttgattatagtg 84  Q
    ||||||||||||||||||  || ||||||||||||| || |||||||||  ||||||||||||||    
T  11766918 aggcaaggaaatctaggacgagattgtcttagtgttattgttgtaatcaggatttgattatagtg 11766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 3503520 - 3503560
Alignment:
Q  239 acacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  3503520 acacaattcaaacccat-tttcttgtgtttttctcaccttca 3503560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 22167852 - 22167900
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttcagacttaa 287  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||||||    
T  22167852 aacacaattcaaacccccctt-cttgtgtttttctcaccttcaaacttaa 22167900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28888488 - 28888443
Alignment:
Q  235 accaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||| ||||   |||||||||||||||||||||||    
T  28888488 accaacacaattcaacccccctcttcttgtgtttttctcaccttca 28888443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 21691661 - 21691615
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcaccttcaga 282  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||    
T  21691661 ccaacacaattcaaccccccctttcttgtgtttttctcaccttcaga 21691615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 9761925 - 9761886
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||||||   ||||||||||||||||||||||    
T  9761925 aacacaattcaaacccct---tcttgtgtttttctcaccttca 9761886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 13138846 - 13138889
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||||| ||||| || |||||||||||||||||||||    
T  13138846 ccaacacaattcaaccccctctt-cttgtgtttttctcaccttca 13138889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 12264396 - 12264350
Alignment:
Q  234 gaccaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  12264396 gaccaacacaattcaaacctttatttgttgtgtttttctcaccttca 12264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 10899373 - 10899417
Alignment:
Q  237 caacacaattcaaacccctatttcttgtgtttttctcaccttcag 281  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  10899373 caacacaattcaaccccccatttcttgtgtttttcccaccttcag 10899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 24415831 - 24415873
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||| ||||  ||||||||||||||||||||||||    
T  24415831 aacacaattcaaccccccctttcttgtgtttttctcaccttca 24415873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 26673496 - 26673459
Alignment:
Q  20 aggcaaggaaatctaggattaggttgtcttagtgttgt 57  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  26673496 aggcaaggaaatctaggactaggttgtcttagcgttgt 26673459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 20319521 - 20319564
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttcaga 282  Q
    |||||||||||| ||||| || |||||||||||||||||||||||    
T  20319521 aacacaattcaaccccctctt-cttgtgtttttctcaccttcaga 20319564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 11704537 - 11704496
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcacctt 278  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  11704537 ccaacacaattcaa-cccctacttcttgtgtttttctcacctt 11704496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 14101358 - 14101400
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttcaga 282  Q
    |||||||||||| |||||  |||||||||||||||||||||||||    
T  14101358 aacacaattcaaccccct--ttcttgtgtttttctcaccttcaga 14101400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 19687972 - 19687928
Alignment:
Q  235 accaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||    
T  19687972 accaacacaattcaaccccctctt-cttgtgtttttctcaccttca 19687928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 12347322 - 12347282
Alignment:
Q  240 cacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  12347322 cacaattcaaccccctcattcttgtgtttttctcaccttca 12347282  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 17280 - 17240
Alignment:
Q  238 aacacaattcaaacccctatttcttgtgtttttctcaccttc 279  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  17280 aacacaattcaaacccat-tttcttgtgtttttctcaccttc 17240  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 16631675 - 16631631
Alignment:
Q  235 accaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||    
T  16631675 accaacacaattcaaccccctctt-cttgtgtttttctcaccttca 16631631  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 145319 - 145363
Alignment:
Q  236 ccaacacaattcaaacccctatttcttgtgtttttctcaccttca 280  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||    
T  145319 ccaacacaattcaaccccatccttcttgtgtttttctcaccttca 145363  T

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