View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_27 (Length: 358)
Name: NF3879_high_27
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 21389389 - 21389291
Alignment:
| Q |
2 |
tacatttatcctacaattaacttccttttttaagttaacaattgtctttatatttgtttttactcattatccatacaacttagtcaccatcactcccaca |
101 |
Q |
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| T |
21389389 |
tacatttatcctacaattaacttccttttttt-gttaacaattgtctttaaatttgtttttactcattatccctacaacttagtcaccatcactcccaca |
21389291 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 21388852 - 21388774
Alignment:
| Q |
265 |
gttgaataatggaattaaaaagaagtttacatcgtgagattaaaggtagaaccgcccaaattgcaaattttgtaatagc |
343 |
Q |
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| T |
21388852 |
gttgaataatgaaatgaaaaggaagtttacattgtgagattaacggtggaaccgctcaaattgcaaatgttgtaatagc |
21388774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 21389020 - 21388962
Alignment:
| Q |
96 |
cccacaaaaatatatgcactccttttctttacgccttcttattaggttcactccctgtg |
154 |
Q |
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| T |
21389020 |
cccacaaaaatatatgcactccttttctttatgccttattattaggttcacaccctgtg |
21388962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 41122418 - 41122478
Alignment:
| Q |
68 |
ttatccatacaacttagtcaccatcactcccacaaaaatatatgcactccttttctttacgcctt |
132 |
Q |
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| T |
41122418 |
ttatccctacaacttagtcaccatcactaccacaaaa----atgcagtccttttctttatgcctt |
41122478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 44198093 - 44198030
Alignment:
| Q |
68 |
ttatccatacaacttagtcaccatcactcccacaaaaatatatgcactccttttctttacgccttctt |
135 |
Q |
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| T |
44198093 |
ttatccctacaacttagtcaccaccgctaccacaaaaat----gcagtccttttctttacgccttctt |
44198030 |
T |
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