View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_31 (Length: 328)
Name: NF3879_high_31
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 34693057 - 34692753
Alignment:
| Q |
15 |
agagaagagaagaggtagtgtagtaataaataactgtaatggaagatgatgtaattgaacgagtagaaaaagggagggtg--gaggttacaaatgtaaag |
112 |
Q |
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| T |
34693057 |
agagaagagaagaggtagtgtagtagtaaataactgtaatggaagatgatgtaattgaacgagtagaaaaagggagggtgtggaggttacaaatgtaaag |
34692958 |
T |
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| Q |
113 |
ttctttctttagggtttattggattggattggattgactcgagggttgtatttatttcatacgttactcaaattgtctctttttgaactcaaattgtatc |
212 |
Q |
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| T |
34692957 |
ttctttctttagggtttattggattggattggattgactcgagggttgtatttatttcatacgttactcaaattgtctctttttgaactcaaattgtatt |
34692858 |
T |
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| Q |
213 |
attaattcagggagtttttat----tttagccgatgttttgcattgctgatctgaccaaacttgagaaattgctagttaccgcaccatagttgttagagc |
308 |
Q |
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| T |
34692857 |
attatttcagggagtttttattttatttagccgatgttttgcattgctgatctgaccaaacttgagaaattgctagttaccgcaccatagttgttagagc |
34692758 |
T |
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| Q |
309 |
aacct |
313 |
Q |
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| T |
34692757 |
aacct |
34692753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 34685161 - 34685115
Alignment:
| Q |
46 |
aactgtaatggaagatgatgtaattgaacgagtagaaaaagggaggg |
92 |
Q |
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| T |
34685161 |
aactgtgatggatgatgatgtaattgaaagagtagaaaaggggaggg |
34685115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 8282887 - 8282833
Alignment:
| Q |
45 |
taactgtaatggaagatgatgtaattgaacgagtagaaaaagggagggtggaggtt |
100 |
Q |
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| T |
8282887 |
taactgtaatggaagatgatgtaattgcaagagt-gaataatggagggtggaggtt |
8282833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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