View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_32 (Length: 319)
Name: NF3879_high_32
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 38744057 - 38743759
Alignment:
| Q |
11 |
cacagatatgcttgtgtaaaattgttgaattttataaaaacaatccaatctaatgtttttctaggtacaacaaaatccaacgtaaagtttgcatacatag |
110 |
Q |
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| T |
38744057 |
cacagatatgcttgtgtaaaattgttgaattttataaaaacaatccaatctaatgtttttctaggtacaacaaaatccaacgtaaagtttgcatacatag |
38743958 |
T |
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| Q |
111 |
aagtaaaatttatagcaaaaatatttttacatgcattcagaat-----acataaatagagaacggtgttgagttt-tttatgttaatgatatggatttac |
204 |
Q |
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| T |
38743957 |
aagtaaaatttatagcaaaaatatttttacatgcattcagaatatataaaataaatagagaacggtgttgagtttctttatgttaataatatggatttac |
38743858 |
T |
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| Q |
205 |
acagaagaagagagaagttttttgaataagctaaactagtgtcaaatttgataccggagataatcgaacttgaaatattcagaggagcacacactacaaa |
304 |
Q |
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| T |
38743857 |
acagaagaagagagaagttttttgaat----------------aaaattgataccgaagataatcgaacttgaaatattcagaggagcacacactccaaa |
38743774 |
T |
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