View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_33 (Length: 308)
Name: NF3879_high_33
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 25928527 - 25928818
Alignment:
| Q |
2 |
tttttaaaacccaacatcagctcaatgaccaaatattgtggaggatcaattccacccttcactattaaaatcacccaaatctcaaagtcacccaagtatt |
101 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25928527 |
ttttgaaaaccaaacatcagctcaatgaccaaatattgtggaggatcaattccacccttcacaattaaaatcacccaaatctcaaagtcacccaagtatt |
25928626 |
T |
|
| Q |
102 |
ttcctcactagcaaggggtctattaaaagttatagcaaaattttgtatagactattcaaaccctagaccattagaagagtatactcagaaggtctcaagc |
201 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
25928627 |
ttcctcactaacaatgggtctattaaaagttatagcaaaattttgtatagactattcaaacccgagaccattagaattgtatactc-gaaggtctcaagc |
25928725 |
T |
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| Q |
202 |
ctacaccaccagaccaactcatctccggtgatgataaaaattcactaatataatatgttttcttaatataaaaactgaaatcaagtaattaat |
294 |
Q |
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||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25928726 |
ctataccaccagaccaagtcatctccagtgatgataaaaattcactaatataatatgttttcttattataaaaactgaaatcaagtaattaat |
25928818 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 10538846 - 10538814
Alignment:
| Q |
190 |
aaggtctcaagcctacaccaccagaccaactca |
222 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
10538846 |
aaggtctcaagccaacaccaccagaccaactca |
10538814 |
T |
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