View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_34 (Length: 301)
Name: NF3879_high_34
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 2289355 - 2289638
Alignment:
| Q |
19 |
aatagcagcaccacaaaaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnn-----gaagcacca |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||| | |
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| T |
2289355 |
aatagcagcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcacta |
2289454 |
T |
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| Q |
114 |
agtattaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2289455 |
agtattaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtt |
2289554 |
T |
|
| Q |
214 |
tgctattcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcacctttgctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
2289555 |
tgctattcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctt |
2289638 |
T |
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