View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_35 (Length: 301)
Name: NF3879_high_35
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 44708252 - 44708528
Alignment:
| Q |
25 |
cataaaacattaacaaaaagaacatgtattgtttgtttctcagaaaaatgttactagaaactataaacttggttattaccgaaaatgctgtcttccgatt |
124 |
Q |
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| T |
44708252 |
cataaaacattaacaaaaagaacatgtattgtttgtttctcagaaaaatgttactagaaactataaacttggttattaccgaaaatgctgtcttccgatt |
44708351 |
T |
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| Q |
125 |
cgatcggagcaaggaactagatatacaaacaacattaagaagaacacacaaaaaacatcattaactaggatggtttaaagagaaaatcatgttgtgtgaa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708352 |
cgatcggagcaaggaactagatatacaaacaacattaagaagaacacacaaaaaacatcattaactaggatggtttaaagagaaaatcatgttgtgtgaa |
44708451 |
T |
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| Q |
225 |
aatgttaccttacggtttgtgagccaccaatgtttcttttctgtagcggttagagagtgagttgtcaccgccatttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708452 |
aatgttaccttacggtttgtgagccaccaatgtttcttttctgtagcggttagagagtgagttgtcaccgccatttt |
44708528 |
T |
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