View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_38 (Length: 299)
Name: NF3879_high_38
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 38618658 - 38618937
Alignment:
| Q |
1 |
aaggtttaaggaaaaatatttctacaaatgtcatataggagaaagcaacaatactaaaatgaataatgctggatatgatactagtacaaagaccaatggc |
100 |
Q |
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| T |
38618658 |
aaggtttaaggaaaaatatttctacaaatgtcatataggagaaagcaacaattctaaaatgaataatgctggataagatactagtacaaagaccaatggc |
38618757 |
T |
|
| Q |
101 |
gcagccatgactagctataagccatttacacatttcatcttcaaaccacccatgtatggtcagcaattcgtgtgagtgtgactggttcaattccgttcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38618758 |
gcagccatgactagctataagccatttacacatttcatcttcaaaccacccatgtatggttagcaattcgtgtgagtgtgactggttcaattccgttcgt |
38618857 |
T |
|
| Q |
201 |
atgcatttttgtatcccaacaggcaacaacattagtacaagaaatagcataaaaaattcatgtaattgaaggctgcacaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38618858 |
atgcatttttgtatcccaacaggcaacaacattagtacaagaaatagcataaaaaattcatgtaattgaaggctgcacaa |
38618937 |
T |
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