View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_46 (Length: 267)
Name: NF3879_high_46
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_46 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 44087375 - 44087630
Alignment:
| Q |
10 |
gcacagactattgtaacaagaaaatatatatacaccggataattaattttaattactaggagggataaaatgatcggattattctttacgattatcatat |
109 |
Q |
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| T |
44087375 |
gcacagactattgtaacaagaaaatataaatacaccggataattaattttaattactaggagggataaaatgatcggattattctttacgattatcatat |
44087474 |
T |
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| Q |
110 |
tcaaggatcaaagtatcttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgatataacatttgaccaagcctttaca |
209 |
Q |
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| T |
44087475 |
tcaaggatcaaagtatcttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgatataacatttgaccaagcctttaca |
44087574 |
T |
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| Q |
210 |
ataaccctccaaagaggagaagatgttgaactaacaataataaaagacatggtattac |
267 |
Q |
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| T |
44087575 |
ataaccctccaaagaggaga--atgttgaactaacaataataaaagacatggtattac |
44087630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 267
Target Start/End: Original strand, 44103270 - 44103443
Alignment:
| Q |
87 |
attattctttacgattatcatattcaaggatcaaagtatcttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgata |
186 |
Q |
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|||| |||||| ||||| |||||||||||||| ||||||| | | ||| | |||||||||||||| |||| |||||||| | |||||||||||| |
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| T |
44103270 |
attaatctttaagattaacatattcaaggatccaagtatcattacaaactttgttggtgttttca----tcat---cacttatccttaatatatttgata |
44103362 |
T |
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| Q |
187 |
taacatttgaccaagcctttacaataaccctccaaagaggagaagatgttgaactaacaataataaaagacatggtattac |
267 |
Q |
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| T |
44103363 |
taacattcgaccattcctttacaataaccttctaaagaggagaagatgttgaactaacactaatagaagaaatgctattac |
44103443 |
T |
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