View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_48 (Length: 261)
Name: NF3879_high_48
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29413556 - 29413312
Alignment:
| Q |
1 |
ttattattactatcatcattgttagaagaatcaagtgatgaaactgaatttccttggtcagcaacaaaatcagttgtggtaactgaatatctacaaacag |
100 |
Q |
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| T |
29413556 |
ttattattactatcatcattgttagaagaatcaagtgatgaaactgaatttccttggtctgcaacaaaatcagttgtggtaactgaatatctacaaacag |
29413457 |
T |
|
| Q |
101 |
acaaagaaacacaatgccatctttctttccctatacaattccttctagaactagaaagagaaactcttctaacaacagaatgtgacattctagaagaact |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29413456 |
acaaagaaacacaatgccatctttttttccctatacaattccttctagaactagaaagagaaactcttctaacaacagaatgtgacattctagaagaact |
29413357 |
T |
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| Q |
201 |
acctaaacttattggtgaagcaagagaactcattgatgttccttg |
245 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29413356 |
accaaaacttattggtgaagcaagagaactcattgatgttccttg |
29413312 |
T |
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