View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_49 (Length: 260)
Name: NF3879_high_49
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 29015892 - 29015649
Alignment:
| Q |
15 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgct |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29015892 |
cagagaaacaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacatttct |
29015793 |
T |
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| Q |
115 |
ggtaaacgcataaaacattaacctagttgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29015792 |
ggtaaacgcataaaacattaacctagatgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
29015693 |
T |
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| Q |
215 |
gaaattttttctatcagaggaactgaaatatatgcatttgtcaa |
258 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29015692 |
gaaattttttctatcagaggaactgaaatatacgcatttgtcaa |
29015649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 24086266 - 24086024
Alignment:
| Q |
15 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
24086266 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctgttaaagaattaaatcaaagtgacattgct |
24086167 |
T |
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| Q |
115 |
ggtaaacgcataaaacattaacctagttgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||| |
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| T |
24086166 |
ggtaaacgcataaaacattaacctagatgctacattaatttgtcaacttatatcttacttccaaatgcttatataattgtttctctatgttatcatatag |
24086067 |
T |
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| Q |
215 |
gaaattttttctatcagaggaactgaaatatatgcatttgtcaa |
258 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24086066 |
gaaacgttttctatcagaggaactgaaata-atgcatttgtcaa |
24086024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 16168345 - 16168236
Alignment:
| Q |
31 |
aagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgctggtaaacgcataaaac |
130 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
16168345 |
aagagacaccataaatttattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcgaagtgacattgctggcaaacgcataaaac |
16168246 |
T |
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| Q |
131 |
attaacctag |
140 |
Q |
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| ||||||| |
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| T |
16168245 |
ttgaacctag |
16168236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 21880750 - 21880662
Alignment:
| Q |
40 |
cataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgctggtaaacgcataaa |
128 |
Q |
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||||| || ||||||| |||||||| ||||| ||||| ||||| |||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
21880750 |
cataagtttattgaatactatgatgtaagagctgcagaagcagcacttaaatcattaaataggagtgacatagctggtaaacgcataaa |
21880662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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