View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3879_high_5 (Length: 538)
Name: NF3879_high_5
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Original strand, 19755291 - 19755795
Alignment:
| Q |
12 |
catcatcaacacttttagcattcaaatcttgaggaggttcagaaagcattttctctcggtcttcatcatctttgggaggactagagtcaactatcatatt |
111 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19755291 |
catcttcaacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctttgggaggactagagtcaattatcatatt |
19755390 |
T |
|
| Q |
112 |
gtcctcaaagatggggtcaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcattgctaactttagcacccttaaacacataa |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
19755391 |
gtcctcaaagatggggttaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcattgctaacttcagcaccctgaaacacatta |
19755490 |
T |
|
| Q |
212 |
aaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagataccttcgacgcattatctccaacgcatgaatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19755491 |
aaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagataccttcgacgcattatctccaacgcatgaatg |
19755590 |
T |
|
| Q |
312 |
tgcactagcaggtttgccttctttacgccctcgatttttctttatggggcccttcacagctgcttctccatcaattacattgttaccattatctggattt |
411 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
19755591 |
tgtactactaggtttgccttgtttacgccctcgatttttctttatggggcccttcacaacagcttttccatcagttacattgttaccattatctagattt |
19755690 |
T |
|
| Q |
412 |
tcttgagaatgattgacggaattgtgctcacttgaatctttgggtttttcttgagcatgttttcttttcttctccttctcaattcgaatctcataaacag |
511 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19755691 |
tcttgagaatgattgacggaattttgctcactagaatctttgggttttttttgagcatgttttcttttcttctccttctcaattcgaatctcagaaacaa |
19755790 |
T |
|
| Q |
512 |
ttgct |
516 |
Q |
| |
|
||||| |
|
|
| T |
19755791 |
ttgct |
19755795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University