View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_56 (Length: 242)
Name: NF3879_high_56
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 6504882 - 6504703
Alignment:
| Q |
58 |
ttcatattactgtgactccttccttnnnnnnnngataacatgtttcccacggattctttttgaagggtgtttcctacaaggtgtgagtttaaaaggtcaa |
157 |
Q |
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| T |
6504882 |
ttcatattactgtgactccttcct-aaaaaaaagataacatgttttccacggattcttttttaaggatgtttcctacaaggtgtgagtttaaaaggtcaa |
6504784 |
T |
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| Q |
158 |
caaattccaatttctataatattttatcttccaacacttgtctcattgtgtatatatcatcattaccaccgcaagtgttcat |
239 |
Q |
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| T |
6504783 |
caa-ttccaatttctataatattttatcttccaacacttgtctcattgtgtatatatcatcattaccatcgcaagtgttcat |
6504703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6504974 - 6504919
Alignment:
| Q |
1 |
taataaattgtcattatgatggatcttatcgaactcgaatcctattagtgtggaaa |
56 |
Q |
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| T |
6504974 |
taataaattgtcattatgatggatcttatcaaactcgaatcctattagtgtggaaa |
6504919 |
T |
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