View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_57 (Length: 240)
Name: NF3879_high_57
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_57 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 44087847 - 44087623
Alignment:
| Q |
17 |
agttagaagcatttattgttggttaccttgaatcacttagttgaaaagtaaatttcaactttggtgaactaagtttgatgctttgacatactnnnnnnnn |
116 |
Q |
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| T |
44087847 |
agttagaagcatttattgttggttaccttgaatcacttagttgaaaagtaaatttcaactttggtgaacaaagtttgatgctttgacatactgaaaaaaa |
44087748 |
T |
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| Q |
117 |
-tgaaggtgtattggggctaagtgtatatgaagaccttgaatgaggtttatatatgtaaattagcgtggcaaattgtggctaatcctaagaaattatgtg |
215 |
Q |
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| T |
44087747 |
gtgaaggtgtattggggttaagtgtatatgaagaccttgaatgaggtttatatatgtaaattagcgtggcaaattgtggctaatcctaagaaattatgtg |
44087648 |
T |
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| Q |
216 |
taagtataaatgtgattgtaatacc |
240 |
Q |
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| T |
44087647 |
taagtataaatgtgattgtaatacc |
44087623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 44103541 - 44103438
Alignment:
| Q |
135 |
aagtgtatatgaagaccttgaatgaggtttatatatgtaaattagcgtggcaaattgtggctaatcctaagaaattatgtgtaagtataaatgtgattgt |
234 |
Q |
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| T |
44103541 |
aagtgtatataaagatcttgaatgaaggttatatgtgtaaattaacatggcaaatggtggccaatcctgaaaaattatgtgctagtataaatgtggttgt |
44103442 |
T |
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| Q |
235 |
aata |
238 |
Q |
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|||| |
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| T |
44103441 |
aata |
44103438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 44103645 - 44103587
Alignment:
| Q |
46 |
gaatcacttagttgaaaagtaaatttcaactttggtgaactaagtttgatgctttgaca |
104 |
Q |
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| T |
44103645 |
gaatcacttagttgaaaggtaaatttcaatcttggtgaactgagtttaatgctctgaca |
44103587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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