View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_58 (Length: 240)
Name: NF3879_high_58
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 41686270 - 41686474
Alignment:
| Q |
17 |
cagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttgnnnnnnnn |
116 |
Q |
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| T |
41686270 |
cagagattgaaaatgcaccagttgtcactgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttg---attat |
41686366 |
T |
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| Q |
117 |
nnnnnnnnnggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgatattttttgtaatatgtgaac |
216 |
Q |
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| T |
41686367 |
tattattatggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgata-tttttgtaatatgtgaac |
41686465 |
T |
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| Q |
217 |
tatattttg |
225 |
Q |
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| T |
41686466 |
tgtattttg |
41686474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 51205887 - 51205978
Alignment:
| Q |
17 |
cagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttg |
108 |
Q |
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||||||||||||||| |||||||| | |||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
51205887 |
cagagattgaaaatgttccagttgtaactgatgttggaaatctttatgctcctctttttcacaatgtttccatgtttaagaggtatcatttg |
51205978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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