View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_high_66 (Length: 214)

Name: NF3879_high_66
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_high_66
NF3879_high_66
[»] chr5 (12 HSPs)
chr5 (111-199)||(19373115-19373204)
chr5 (50-83)||(1658242-1658275)
chr5 (48-81)||(26149666-26149699)
chr5 (50-83)||(38302341-38302374)
chr5 (50-81)||(10295548-10295579)
chr5 (50-81)||(17092962-17092993)
chr5 (50-81)||(27480157-27480188)
chr5 (50-81)||(35868894-35868925)
chr5 (50-81)||(37508375-37508406)
chr5 (50-83)||(3746481-3746514)
chr5 (48-81)||(35705131-35705164)
chr5 (50-79)||(41638436-41638465)
[»] chr8 (10 HSPs)
chr8 (26-83)||(37659514-37659571)
chr8 (21-83)||(31297331-31297393)
chr8 (50-81)||(1942038-1942069)
chr8 (50-81)||(2474752-2474783)
chr8 (50-81)||(3404559-3404590)
chr8 (50-81)||(4734481-4734512)
chr8 (50-81)||(34272580-34272611)
chr8 (51-81)||(34148564-34148594)
chr8 (48-81)||(43733105-43733138)
chr8 (50-86)||(36906252-36906288)
[»] chr7 (15 HSPs)
chr7 (50-83)||(46449237-46449270)
chr7 (50-81)||(5968038-5968069)
chr7 (50-81)||(23620778-23620809)
chr7 (50-81)||(39670848-39670879)
chr7 (50-81)||(41002236-41002267)
chr7 (50-81)||(43188922-43188953)
chr7 (50-81)||(43665154-43665185)
chr7 (51-81)||(3658496-3658526)
chr7 (50-83)||(7667148-7667181)
chr7 (50-83)||(47275985-47276018)
chr7 (21-81)||(2826232-2826292)
chr7 (50-78)||(36747360-36747388)
chr7 (50-78)||(38235859-38235887)
chr7 (50-78)||(42220102-42220130)
chr7 (50-78)||(42620340-42620368)
[»] chr4 (16 HSPs)
chr4 (24-81)||(13269992-13270049)
chr4 (44-81)||(37756708-37756745)
chr4 (48-81)||(54806533-54806566)
chr4 (50-81)||(3126997-3127028)
chr4 (50-81)||(7182176-7182207)
chr4 (50-81)||(13270260-13270291)
chr4 (50-81)||(32060711-32060742)
chr4 (50-81)||(32948511-32948542)
chr4 (50-81)||(38366092-38366123)
chr4 (50-81)||(47669875-47669906)
chr4 (50-81)||(49404608-49404639)
chr4 (50-81)||(56504454-56504485)
chr4 (51-81)||(41363797-41363827)
chr4 (52-81)||(17622457-17622486)
chr4 (24-81)||(32648989-32649046)
chr4 (50-78)||(904262-904290)
[»] chr3 (23 HSPs)
chr3 (48-81)||(31178232-31178265)
chr3 (50-83)||(45555698-45555731)
chr3 (24-81)||(47714658-47714715)
chr3 (25-81)||(17642629-17642685)
chr3 (45-81)||(46017265-46017301)
chr3 (50-81)||(2420724-2420755)
chr3 (50-81)||(27055889-27055920)
chr3 (50-81)||(30121507-30121538)
chr3 (50-81)||(33982724-33982755)
chr3 (50-81)||(34306663-34306694)
chr3 (50-81)||(39499263-39499294)
chr3 (50-81)||(41961962-41961993)
chr3 (50-81)||(43007507-43007538)
chr3 (50-81)||(46312405-46312436)
chr3 (50-81)||(47434305-47434336)
chr3 (50-81)||(47789431-47789462)
chr3 (50-80)||(42583284-42583314)
chr3 (48-81)||(7661099-7661132)
chr3 (50-83)||(39114947-39114980)
chr3 (24-81)||(44412140-44412197)
chr3 (50-78)||(30131874-30131902)
chr3 (50-86)||(38515302-38515338)
chr3 (49-81)||(38526217-38526249)
[»] chr2 (17 HSPs)
chr2 (24-81)||(13765924-13765981)
chr2 (48-81)||(18780447-18780480)
chr2 (50-81)||(3119837-3119868)
chr2 (50-81)||(4042029-4042060)
chr2 (50-81)||(7786475-7786506)
chr2 (50-81)||(8410915-8410946)
chr2 (50-81)||(10165478-10165509)
chr2 (50-81)||(13767483-13767514)
chr2 (50-81)||(25960595-25960626)
chr2 (50-81)||(36567263-36567294)
chr2 (50-81)||(43334872-43334903)
chr2 (50-81)||(44137200-44137231)
chr2 (50-78)||(1725974-1726002)
chr2 (50-78)||(8555764-8555792)
chr2 (50-86)||(31550242-31550278)
chr2 (50-78)||(31899344-31899372)
chr2 (25-81)||(40357497-40357553)
[»] chr1 (19 HSPs)
chr1 (48-81)||(27500047-27500080)
chr1 (48-81)||(43571950-43571983)
chr1 (48-80)||(17675259-17675291)
chr1 (50-81)||(896480-896511)
chr1 (50-81)||(7964039-7964070)
chr1 (50-81)||(13255409-13255440)
chr1 (50-81)||(23871448-23871479)
chr1 (50-81)||(32299167-32299198)
chr1 (50-81)||(39889643-39889674)
chr1 (50-81)||(40707189-40707220)
chr1 (50-81)||(42162038-42162069)
chr1 (50-81)||(42488612-42488643)
chr1 (50-81)||(47206409-47206440)
chr1 (50-81)||(47905674-47905705)
chr1 (48-81)||(36269806-36269839)
chr1 (50-78)||(15463875-15463903)
chr1 (50-78)||(39508835-39508863)
chr1 (50-78)||(50247661-50247689)
chr1 (50-78)||(51246562-51246590)
[»] scaffold0028 (1 HSPs)
scaffold0028 (50-81)||(35440-35471)
[»] chr6 (7 HSPs)
chr6 (50-81)||(1029358-1029389)
chr6 (50-81)||(23095113-23095144)
chr6 (50-81)||(24734945-24734976)
chr6 (50-81)||(26574380-26574411)
chr6 (24-81)||(4909900-4909957)
chr6 (24-81)||(5825371-5825428)
chr6 (24-81)||(34914666-34914723)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 19373115 - 19373204
Alignment:
Q  111 tgtacattaaa-taaagaagttagatgaagtgccgattagtttttaaatcatttgattgatacttggtatactcaattttatcaaataag 199  Q
    ||||||||||| ||||| |||||||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19373115 tgtacattaaaataaagcagttagatgaagtatcaattagtttttaaatcatttgattgatatttggtatactcaattttatcaaataag 19373204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 1658242 - 1658275
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||||||||||||||||||||||||||||||    
T  1658242 tttatatgaatttttcaaattcaatctatgttat 1658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 26149666 - 26149699
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  26149666 gatttatatgaatttttcaaattcaatctatgtt 26149699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 38302374 - 38302341
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||||||||||||||||||||||||||||||    
T  38302374 tttatatgaatttttcaaattcaatctatgttat 38302341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 10295548 - 10295579
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  10295548 tttatatgaatttttcaaattcaatctatgtt 10295579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 17092962 - 17092993
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  17092962 tttatatgaatttttcaaattcaatctatgtt 17092993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 27480188 - 27480157
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  27480188 tttatatgaatttttcaaattcaatctatgtt 27480157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 35868894 - 35868925
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  35868894 tttatatgaatttttcaaattcaatctatgtt 35868925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 37508406 - 37508375
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  37508406 tttatatgaatttttcaaattcaatctatgtt 37508375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 3746514 - 3746481
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||| ||||||||||||||||||||||||||    
T  3746514 tttatataaatttttcaaattcaatctatgttat 3746481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 35705164 - 35705131
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||| |||||||||||||||||||    
T  35705164 gatttatatgaattcttcaaattcaatctatgtt 35705131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 41638436 - 41638465
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatg 79  Q
    ||||||||||||||||||||||||||||||    
T  41638436 tttatatgaatttttcaaattcaatctatg 41638465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 37659571 - 37659514
Alignment:
Q  26 agggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||||||  |||| ||| |||||||||| ||||||||||||||||||||||||||    
T  37659571 agggttttgggggattatggaagatttatataaatttttcaaattcaatctatgttat 37659514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 31297393 - 31297331
Alignment:
Q  21 ggaggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgttat 83  Q
    |||||||||||||||  | || |||  | ||||||||||||||||||||||||||||||||||    
T  31297393 ggaggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatgttat 31297331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 1942069 - 1942038
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  1942069 tttatatgaatttttcaaattcaatctatgtt 1942038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 2474783 - 2474752
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  2474783 tttatatgaatttttcaaattcaatctatgtt 2474752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 3404590 - 3404559
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  3404590 tttatatgaatttttcaaattcaatctatgtt 3404559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 4734512 - 4734481
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  4734512 tttatatgaatttttcaaattcaatctatgtt 4734481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 34272580 - 34272611
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  34272580 tttatatgaatttttcaaattcaatctatgtt 34272611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 34148594 - 34148564
Alignment:
Q  51 ttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||||||||||||||||||||    
T  34148594 ttatatgaatttttcaaattcaatctatgtt 34148564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 43733138 - 43733105
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||| ||||||||||||||||    
T  43733138 gatttatatgaatttttaaaattcaatctatgtt 43733105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 36906252 - 36906288
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttatcat 86  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  36906252 tttatatgaatttttcaaatccaatctatgttgtcat 36906288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 46449237 - 46449270
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||||||||||||||||||||||||||||||    
T  46449237 tttatatgaatttttcaaattcaatctatgttat 46449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 5968069 - 5968038
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  5968069 tttatatgaatttttcaaattcaatctatgtt 5968038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 23620809 - 23620778
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  23620809 tttatatgaatttttcaaattcaatctatgtt 23620778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 39670879 - 39670848
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  39670879 tttatatgaatttttcaaattcaatctatgtt 39670848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 41002267 - 41002236
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  41002267 tttatatgaatttttcaaattcaatctatgtt 41002236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 43188922 - 43188953
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  43188922 tttatatgaatttttcaaattcaatctatgtt 43188953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 43665185 - 43665154
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  43665185 tttatatgaatttttcaaattcaatctatgtt 43665154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 3658526 - 3658496
Alignment:
Q  51 ttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||||||||||||||||||||    
T  3658526 ttatatgaatttttcaaattcaatctatgtt 3658496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 7667181 - 7667148
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    |||||||||||||||||||| |||||||||||||    
T  7667181 tttatatgaatttttcaaatccaatctatgttat 7667148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 47276018 - 47275985
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    |||||||||||||||||||| |||||||||||||    
T  47276018 tttatatgaatttttcaaatccaatctatgttat 47275985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 2826292 - 2826232
Alignment:
Q  21 ggaggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||||  |||| ||| || |||||||||||| |||||||| |||| |||||    
T  2826292 ggaggagggttttgggggattttggaagctttatatgaattcttcaaatttaatcaatgtt 2826232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 36747360 - 36747388
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  36747360 tttatatgaatttttcaaattcaatctat 36747388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 38235859 - 38235887
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  38235859 tttatatgaatttttcaaattcaatctat 38235887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 42220102 - 42220130
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  42220102 tttatatgaatttttcaaattcaatctat 42220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 42620368 - 42620340
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  42620368 tttatatgaatttttcaaattcaatctat 42620340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 13269992 - 13270049
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  | || |||| | ||||||||||||||||||||||||||||||||    
T  13269992 ggagggttttggggggttatggggggtttatatgaatttttcaaattcaatctatgtt 13270049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 37756745 - 37756708
Alignment:
Q  44 gggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37756745 gggaggtttatatgaatttttcaaattcaatctatgtt 37756708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 54806533 - 54806566
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  54806533 gatttatatgaatttttcaaattcaatctatgtt 54806566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 3127028 - 3126997
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  3127028 tttatatgaatttttcaaattcaatctatgtt 3126997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 7182207 - 7182176
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  7182207 tttatatgaatttttcaaattcaatctatgtt 7182176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 13270291 - 13270260
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  13270291 tttatatgaatttttcaaattcaatctatgtt 13270260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 32060711 - 32060742
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  32060711 tttatatgaatttttcaaattcaatctatgtt 32060742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 32948542 - 32948511
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  32948542 tttatatgaatttttcaaattcaatctatgtt 32948511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 38366092 - 38366123
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  38366092 tttatatgaatttttcaaattcaatctatgtt 38366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 47669875 - 47669906
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  47669875 tttatatgaatttttcaaattcaatctatgtt 47669906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 49404639 - 49404608
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  49404639 tttatatgaatttttcaaattcaatctatgtt 49404608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 56504485 - 56504454
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  56504485 tttatatgaatttttcaaattcaatctatgtt 56504454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 41363827 - 41363797
Alignment:
Q  51 ttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||||||||||||||||||||    
T  41363827 ttatatgaatttttcaaattcaatctatgtt 41363797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 17622486 - 17622457
Alignment:
Q  52 tatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||    
T  17622486 tatatgaatttttcaaattcaatctatgtt 17622457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 32649046 - 32648989
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  | || ||| || ||||||||||||||||||||| ||||||||||    
T  32649046 ggagggttttggggggttatggaaggtttatatgaatttttcaaatttaatctatgtt 32648989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 904262 - 904290
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  904262 tttatatgaatttttcaaattcaatctat 904290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 31178265 - 31178232
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  31178265 gatttatatgaatttttcaaattcaatctatgtt 31178232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 45555698 - 45555731
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    ||||||||||||||||||||||||||||||||||    
T  45555698 tttatatgaatttttcaaattcaatctatgttat 45555731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 47714715 - 47714658
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||| | || |||  | ||||||||||||||||||||||||||||||||    
T  47714715 ggagggttttggagggttatggagggtttatatgaatttttcaaattcaatctatgtt 47714658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 17642629 - 17642685
Alignment:
Q  25 gagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||| || |||  ||||||||| |||||||||||||||||| |||||    
T  17642629 gagggttttggaaggttatggaggatttatataaatttttcaaattcaatccatgtt 17642685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 46017265 - 46017301
Alignment:
Q  45 ggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||| ||||||||||||||||||||||||||||||||    
T  46017265 ggaggtttatatgaatttttcaaattcaatctatgtt 46017301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 2420724 - 2420755
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  2420724 tttatatgaatttttcaaattcaatctatgtt 2420755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 27055920 - 27055889
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  27055920 tttatatgaatttttcaaattcaatctatgtt 27055889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 30121538 - 30121507
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  30121538 tttatatgaatttttcaaattcaatctatgtt 30121507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 33982755 - 33982724
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  33982755 tttatatgaatttttcaaattcaatctatgtt 33982724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 34306663 - 34306694
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  34306663 tttatatgaatttttcaaattcaatctatgtt 34306694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 39499263 - 39499294
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  39499263 tttatatgaatttttcaaattcaatctatgtt 39499294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 41961993 - 41961962
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  41961993 tttatatgaatttttcaaattcaatctatgtt 41961962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 43007538 - 43007507
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  43007538 tttatatgaatttttcaaattcaatctatgtt 43007507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 46312436 - 46312405
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  46312436 tttatatgaatttttcaaattcaatctatgtt 46312405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 47434336 - 47434305
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  47434336 tttatatgaatttttcaaattcaatctatgtt 47434305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 47789462 - 47789431
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  47789462 tttatatgaatttttcaaattcaatctatgtt 47789431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 42583314 - 42583284
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgt 80  Q
    |||||||||||||||||||||||||||||||    
T  42583314 tttatatgaatttttcaaattcaatctatgt 42583284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 7661099 - 7661132
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||| ||||||    
T  7661099 gatttatatgaatttttcaaattcaatatatgtt 7661132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 39114980 - 39114947
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttat 83  Q
    |||||||||||| |||||||||||||||||||||    
T  39114980 tttatatgaattcttcaaattcaatctatgttat 39114947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 44412197 - 44412140
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  | || ||| || ||||||||||||||| ||||||||||||||||    
T  44412197 ggagggttttggggggttatggaaggtttatatgaattttttaaattcaatctatgtt 44412140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 30131902 - 30131874
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  30131902 tttatatgaatttttcaaattcaatctat 30131874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 38515302 - 38515338
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttatcat 86  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  38515302 tttatataaatttttcaaattcaatctatgttgtcat 38515338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 38526217 - 38526249
Alignment:
Q  49 atttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  38526217 atttatatgaatttttcaaattcaatatatgtt 38526249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 13765981 - 13765924
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  | ||||||  | ||||||||||||||||||||||||||||||||    
T  13765981 ggagggttttggggggttgtggagggtttatatgaatttttcaaattcaatctatgtt 13765924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 18780447 - 18780480
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  18780447 gatttatatgaatttttcaaattcaatctatgtt 18780480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 3119868 - 3119837
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  3119868 tttatatgaatttttcaaattcaatctatgtt 3119837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 4042029 - 4042060
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  4042029 tttatatgaatttttcaaattcaatctatgtt 4042060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 7786506 - 7786475
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  7786506 tttatatgaatttttcaaattcaatctatgtt 7786475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 8410946 - 8410915
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  8410946 tttatatgaatttttcaaattcaatctatgtt 8410915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 10165478 - 10165509
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  10165478 tttatatgaatttttcaaattcaatctatgtt 10165509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 13767483 - 13767514
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  13767483 tttatatgaatttttcaaattcaatctatgtt 13767514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 25960626 - 25960595
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  25960626 tttatatgaatttttcaaattcaatctatgtt 25960595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 36567294 - 36567263
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  36567294 tttatatgaatttttcaaattcaatctatgtt 36567263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 43334872 - 43334903
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  43334872 tttatatgaatttttcaaattcaatctatgtt 43334903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 44137200 - 44137231
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  44137200 tttatatgaatttttcaaattcaatctatgtt 44137231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 1725974 - 1726002
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  1725974 tttatatgaatttttcaaattcaatctat 1726002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 8555792 - 8555764
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  8555792 tttatatgaatttttcaaattcaatctat 8555764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 31550278 - 31550242
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgttatcat 86  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  31550278 tttatatgaatttttcaaatccaatctatgttgtcat 31550242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 31899372 - 31899344
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  31899372 tttatatgaatttttcaaattcaatctat 31899344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 40357497 - 40357553
Alignment:
Q  25 gagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||  | || ||| || |||||||||||||||||||| |||||||||||    
T  40357497 gagggttttggggggttatggaaggtttatatgaatttttcaaatccaatctatgtt 40357553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 27500047 - 27500080
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  27500047 gatttatatgaatttttcaaattcaatctatgtt 27500080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 43571983 - 43571950
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  43571983 gatttatatgaatttttcaaattcaatctatgtt 43571950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 17675259 - 17675291
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgt 80  Q
    |||||||||||||||||||||||||||||||||    
T  17675259 gatttatatgaatttttcaaattcaatctatgt 17675291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 896511 - 896480
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  896511 tttatatgaatttttcaaattcaatctatgtt 896480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 7964039 - 7964070
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  7964039 tttatatgaatttttcaaattcaatctatgtt 7964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 13255409 - 13255440
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  13255409 tttatatgaatttttcaaattcaatctatgtt 13255440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 23871479 - 23871448
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  23871479 tttatatgaatttttcaaattcaatctatgtt 23871448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 32299167 - 32299198
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  32299167 tttatatgaatttttcaaattcaatctatgtt 32299198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 39889674 - 39889643
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  39889674 tttatatgaatttttcaaattcaatctatgtt 39889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 40707220 - 40707189
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  40707220 tttatatgaatttttcaaattcaatctatgtt 40707189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 42162069 - 42162038
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  42162069 tttatatgaatttttcaaattcaatctatgtt 42162038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 42488643 - 42488612
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  42488643 tttatatgaatttttcaaattcaatctatgtt 42488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 47206440 - 47206409
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  47206440 tttatatgaatttttcaaattcaatctatgtt 47206409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 47905705 - 47905674
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  47905705 tttatatgaatttttcaaattcaatctatgtt 47905674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 36269806 - 36269839
Alignment:
Q  48 gatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||||| |||||||||||||||||||    
T  36269806 gatttatatgaattcttcaaattcaatctatgtt 36269839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 15463875 - 15463903
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  15463875 tttatatgaatttttcaaattcaatctat 15463903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 39508835 - 39508863
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  39508835 tttatatgaatttttcaaattcaatctat 39508863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 50247661 - 50247689
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  50247661 tttatatgaatttttcaaattcaatctat 50247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 51246590 - 51246562
Alignment:
Q  50 tttatatgaatttttcaaattcaatctat 78  Q
    |||||||||||||||||||||||||||||    
T  51246590 tttatatgaatttttcaaattcaatctat 51246562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 35471 - 35440
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  35471 tttatatgaatttttcaaattcaatctatgtt 35440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 1029358 - 1029389
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  1029358 tttatatgaatttttcaaattcaatctatgtt 1029389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 23095144 - 23095113
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  23095144 tttatatgaatttttcaaattcaatctatgtt 23095113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 24734945 - 24734976
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  24734945 tttatatgaatttttcaaattcaatctatgtt 24734976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 26574411 - 26574380
Alignment:
Q  50 tttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||||||||||||||||||||||    
T  26574411 tttatatgaatttttcaaattcaatctatgtt 26574380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4909957 - 4909900
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  | ||||||  | ||||||| ||||||||||||||||||||||||    
T  4909957 ggagggttttggggggttgtggagggtttatatcaatttttcaaattcaatctatgtt 4909900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 5825371 - 5825428
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    ||||||||||||  |||| |||  | ||||||||||||||| ||||||||||||||||    
T  5825371 ggagggttttgggggattatggagggtttatatgaatttttgaaattcaatctatgtt 5825428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 34914666 - 34914723
Alignment:
Q  24 ggagggttttggaagattgtgggagatttatatgaatttttcaaattcaatctatgtt 81  Q
    |||||||||||| || || |||  | ||||||||||||||||||||||||| ||||||    
T  34914666 ggagggttttgggaggttatggagggtttatatgaatttttcaaattcaatttatgtt 34914723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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