View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_high_69 (Length: 201)
Name: NF3879_high_69
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 17752586 - 17752419
Alignment:
| Q |
16 |
atgaaataggcaaataataaaaagcataaatgtaaatgttacggttagcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg |
115 |
Q |
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| T |
17752586 |
atgaaataggcaaatgataaaaagcataaatgtaaatgttacagtttgcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg |
17752487 |
T |
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| Q |
116 |
gacaatttcaggaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaat |
183 |
Q |
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| T |
17752486 |
gacaatttcaagaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaat |
17752419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 17761573 - 17761406
Alignment:
| Q |
16 |
atgaaataggcaaataataaaaagcataaatgtaaatgttacggttagcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg |
115 |
Q |
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| T |
17761573 |
atgaaataggcaaatgataaaaagcataaatgtaaatgttacagtttgcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg |
17761474 |
T |
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| Q |
116 |
gacaatttcaggaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaat |
183 |
Q |
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| T |
17761473 |
gacaatttcaagaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaat |
17761406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 17738424 - 17738338
Alignment:
| Q |
99 |
aaaagattagaagaatggacaatttcaggaatgaact--cacttataaatctatatcatcattaatggtatcacagaacagtgtaat |
183 |
Q |
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||||||||||||||||||||| ||||| | ||||| | ||||| ||||||| || |||||||||||||||||||||||||| |||| |
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| T |
17738424 |
aaaagattagaagaatggacagtttcaagtatgaatttacacttctaaatctgtaccatcattaatggtatcacagaacagtctaat |
17738338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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