View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_11 (Length: 506)

Name: NF3879_low_11
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_11
NF3879_low_11
[»] chr1 (2 HSPs)
chr1 (1-373)||(5032145-5032517)
chr1 (413-499)||(5032557-5032643)
[»] chr5 (5 HSPs)
chr5 (330-373)||(28663554-28663597)
chr5 (330-373)||(25590159-25590202)
chr5 (328-373)||(29948338-29948383)
chr5 (330-373)||(21154214-21154257)
chr5 (330-373)||(21161349-21161392)
[»] chr3 (1 HSPs)
chr3 (323-371)||(10937488-10937536)
[»] chr8 (3 HSPs)
chr8 (330-373)||(28350494-28350537)
chr8 (329-373)||(12642364-12642408)
chr8 (330-367)||(29185462-29185499)
[»] chr7 (1 HSPs)
chr7 (330-373)||(7578740-7578783)
[»] chr6 (1 HSPs)
chr6 (329-373)||(17190874-17190918)
[»] chr2 (5 HSPs)
chr2 (329-373)||(23453737-23453781)
chr2 (330-373)||(19084686-19084729)
chr2 (332-373)||(17830674-17830715)
chr2 (329-373)||(16443195-16443239)
chr2 (330-370)||(18557456-18557496)
[»] chr4 (2 HSPs)
chr4 (330-367)||(8563638-8563675)
chr4 (101-142)||(13015510-13015551)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 5032145 - 5032517
Alignment:
Q  1 tgtgtttctaacatttatttataattttggtgaaattcgtgagaattttagtcaataaaaacgaatgtgttatgatgtgtattagaaagtgtttacaaca 100  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  5032145 tgtgtttctaatatttatctataattttggtgaaattcgtgagaattttagtcaataaaaaagaatgtgttatgatgtgtatttaaaagtgtttacaaca 5032244  T
Q  101 tttttgtttgaataagctaaattaagccacctaaattgacactctcaattctcaagtcaataccaccaaaccaactcatgtgggtttaaagtgttcacaa 200  Q
    |||||||||||| ||| ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  5032245 tttttgtttgaagaagttaaattaatacatctaaattgacactctcaattctcaagtcaataccaccaaaccaacccatgtagatttaaagtgttcacaa 5032344  T
Q  201 cattattatgttattatacattaaatttgggagtcattgagtcattgtgagacaaaggaaatatatttacatagctaaattgaatattttttagacatat 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5032345 cattaatatgttattatacattaaatttgggagtcattgagtcattgtgagacaaaggaaatatatttacatagctaaattgaatattttttagacatat 5032444  T
Q  301 tttaccctaaaagtttaaaatctaataattgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  5032445 tttaccctaaaagtttaaaatctaatagttgttatgaaattaatctaaagtattgcaagatattgtacaacat 5032517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 413 - 499
Target Start/End: Original strand, 5032557 - 5032643
Alignment:
Q  413 tatattgcattacttcacaagtgtgttctagggacatccacatcatattttcataacgaaaatctagttttggttgtttagcctttg 499  Q
    ||||||||||||||| |||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  5032557 tatattgcattactttacaagtatattctaggaacatctacatcatattttcataacgataatctagttttggttgtttggcctttg 5032643  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 28663554 - 28663597
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28663554 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 28663597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 25590202 - 25590159
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  25590202 tgttatgaaattaatctaaagtattgcatgatattgtacaacat 25590159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 29948338 - 29948383
Alignment:
Q  328 attgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||    
T  29948338 attgttatgaaattaatctaaagtatggcaagatattgtgcaacat 29948383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 21154257 - 21154214
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21154257 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21154214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 21161392 - 21161349
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  21161392 tgttatgaaattaatttaatgtattgcaagatattgtacaacat 21161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 10937536 - 10937488
Alignment:
Q  323 taataattgttatgaaattaatctaaaatattgcaagatattgtacaac 371  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  10937536 taattattgttatgaaattaatctaaaatattgtaagatattttacaac 10937488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 28350494 - 28350537
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  28350494 tgttatgaaattaatccaaagtattgcaagatattgtacaacat 28350537  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 12642364 - 12642408
Alignment:
Q  329 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||    
T  12642364 ttgttatgaaattaatcaaaagcattgcaagatattgtacaacat 12642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 29185462 - 29185499
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgta 367  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  29185462 tgttatgaaattaatccaaaatattgcaatatattgta 29185499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 7578783 - 7578740
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  7578783 tgttatgaaattaatctaaagtattgtaagatattgtacaacat 7578740  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 17190918 - 17190874
Alignment:
Q  329 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||    
T  17190918 ttgttatgaaaataatctaaagaattgcaagatattgtacaacat 17190874  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 23453781 - 23453737
Alignment:
Q  329 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  23453781 ttgttatgaaattaatccaaagtattgtaagatattgtacaacat 23453737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 19084729 - 19084686
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  19084729 tgttatgaaattgatcaaaagtattgcaagatattgtacaacat 19084686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 17830674 - 17830715
Alignment:
Q  332 ttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  17830674 ttataaaattaatctaaagtattgtaagatattgtacaacat 17830715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 16443195 - 16443239
Alignment:
Q  329 ttgttatgaaattaatctaaaatattgcaagatattgtacaacat 373  Q
    ||||||| ||||||||| |||  ||||||||||||||||||||||    
T  16443195 ttgttataaaattaatccaaagcattgcaagatattgtacaacat 16443239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 18557456 - 18557496
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgtacaa 370  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  18557456 tgttatgaaattaatcaaaagtattgtaagatattgtacaa 18557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 8563638 - 8563675
Alignment:
Q  330 tgttatgaaattaatctaaaatattgcaagatattgta 367  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  8563638 tgttatgaaattgatctaaagtattgcaagatattgta 8563675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 13015551 - 13015510
Alignment:
Q  101 tttttgtttgaataagctaaattaagccacctaaattgacac 142  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  13015551 ttttttttttaataagctaaattaacccacctaaattgacac 13015510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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