View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_12 (Length: 493)
Name: NF3879_low_12
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Original strand, 23826688 - 23827149
Alignment:
| Q |
17 |
aaaatccagtggactagaaagttttgcaaacgatattaaggagtttgtggaaaaaagtttcc-tttccaaacaaaacnnnnnnnggggtccattacagtt |
115 |
Q |
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| T |
23826688 |
aaaatccagtggactagaaagttttgcaaaccatattaaggagtttgtagaaaaaagtttccctttccaaacaaaacaaaaaaaggggtcccttacagtt |
23826787 |
T |
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| Q |
116 |
acaccatgcttctgttcccataacatgtactacaatacaatgaatgtgatgttacatgcatgaatcaccatactcactttccttcgttctcagcatcttt |
215 |
Q |
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| T |
23826788 |
acaccatgcttctgttcccataacatgcactacaatacaatgaatgtgatgttacatgcatgaatcaccatactcactttccttcgttctcagcatcttt |
23826887 |
T |
|
| Q |
216 |
ctcatatgtctttactaatccatccaaacttttatagcttaagcttttagtcaagttgctcaacttttttagtactgttatacttttcttatgacactct |
315 |
Q |
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| T |
23826888 |
ctcatatgtctttactaatccatccaaacttttatagcttaagcttttagtctagttgctcaacttttttcgtactgttatacttttcttatgacactct |
23826987 |
T |
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| Q |
316 |
atcttgctatatatagcgacacttttcgcaataatggcatgtcaagtgtttgaacgtgttaatgtctaaaccaatactgcactgacatacgtaattacat |
415 |
Q |
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| T |
23826988 |
atcttgctatatatagcgacacttttcgcaataatggcatgtcaagtgtttgaacgtgttaatgtctaaaccaatactacactgacatacgtaattacat |
23827087 |
T |
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| Q |
416 |
tcgattcaatcacttgcattttattaaattgttgtgtatacacgcattagtgcaatttcgtg |
477 |
Q |
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| T |
23827088 |
tcgattcaatcacttgcattttattaaattgttgtgtatacacgcattagtgctatttcgtg |
23827149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 23817813 - 23817871
Alignment:
| Q |
226 |
tttactaatccatccaaacttttatagcttaagcttttagtcaagttgctcaacttttt |
284 |
Q |
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| T |
23817813 |
tttactaatccatccaaacttttttagcttaactttttagtcaagtagctcaacctttt |
23817871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 23817301 - 23817341
Alignment:
| Q |
100 |
ggggtccattacagttacaccatgcttctgttcccataaca |
140 |
Q |
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| T |
23817301 |
ggggtccattacagttacaccatgcttctattcccataaca |
23817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 23830920 - 23830952
Alignment:
| Q |
170 |
catgcatgaatcaccatactcactttccttcgt |
202 |
Q |
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| T |
23830920 |
catgcatgaatcaccatactcaccttccttcgt |
23830952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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