View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_17 (Length: 443)

Name: NF3879_low_17
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_17
NF3879_low_17
[»] chr8 (4 HSPs)
chr8 (232-320)||(31474639-31474727)
chr8 (228-351)||(2245757-2245882)
chr8 (232-314)||(1286631-1286713)
chr8 (232-282)||(1291337-1291386)
[»] chr1 (4 HSPs)
chr1 (231-369)||(15756968-15757106)
chr1 (232-297)||(36164457-36164521)
chr1 (232-314)||(41879833-41879915)
chr1 (233-285)||(42295162-42295214)
[»] chr7 (3 HSPs)
chr7 (234-351)||(1879878-1879992)
chr7 (306-417)||(37355647-37355758)
chr7 (229-282)||(13828198-13828251)
[»] chr4 (7 HSPs)
chr4 (73-194)||(30205465-30205593)
chr4 (228-351)||(41821429-41821554)
chr4 (233-284)||(29258399-29258450)
chr4 (73-132)||(42310366-42310425)
chr4 (232-282)||(31285940-31285989)
chr4 (229-298)||(33334290-33334360)
chr4 (146-194)||(42310285-42310334)
[»] chr5 (5 HSPs)
chr5 (227-315)||(20808702-20808791)
chr5 (74-194)||(43298495-43298622)
chr5 (227-299)||(20830407-20830479)
chr5 (232-282)||(5732968-5733017)
chr5 (227-299)||(34224450-34224524)
[»] chr2 (2 HSPs)
chr2 (233-381)||(17255322-17255469)
chr2 (228-381)||(732053-732207)
[»] chr3 (4 HSPs)
chr3 (145-194)||(39622248-39622298)
chr3 (73-125)||(39621321-39621373)
chr3 (233-285)||(446982-447034)
chr3 (338-417)||(755949-756028)
[»] chr6 (2 HSPs)
chr6 (233-284)||(3595291-3595342)
chr6 (229-297)||(7888239-7888308)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 31474727 - 31474639
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgttattgattagttacaagttcccta 320  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31474727 ttaattaaagtttgttagtgatgtaatcatgtttagttggttaatcacatttgattttagtttgttattgattagttacaagttcccta 31474639  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 351
Target Start/End: Complemental strand, 2245882 - 2245757
Alignment:
Q  228 tttgttaattcaagtttgtta-gtgatgtaatcatgtttagttggttaatcacattaga-ttttagtttgttattgattagttacaagttccctagattt 325  Q
    ||||||||||||||||  | | |||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |     
T  2245882 tttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatggattagttacaagtttcctagaata 2245783  T
Q  326 tagtttgcatttgttagggtttgtta 351  Q
    ||| ||  ||||||||| ||||||||    
T  2245782 tagcttatatttgttagagtttgtta 2245757  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 1286631 - 1286713
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgtta-ttgattagttacaagt 314  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||   ||||||||||||| ||| ||| ||||||||    
T  1286631 ttaattcaagtttgttagtgatataatcat-cttagttggttaatcacatttacttttagtttgttacttggttatttacaagt 1286713  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 1291337 - 1291386
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacatt 282  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  1291337 ttaattcaattttgttagtgatataatcatg-ttagttggttaatcacatt 1291386  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 15756968 - 15757106
Alignment:
Q  231 gttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgtta-ttgattagttacaagttccctagattttagt 329  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||| |||||     
T  15756968 gttaattcaagtttgttattgatgtaatcatgtttagttggttaatcacattag-ttttagtttgttatttgattagttacatgtttcctagaatttagc 15757066  T
Q  330 ttgcatttgttagggtttgttatcttacttgttcttcaag 369  Q
    ||    |||||||||||| |||  || ||||| |||||||    
T  15757067 ttatggttgttagggtttattactttgcttgtacttcaag 15757106  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 36164521 - 36164457
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgtt 297  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||   ||||||||||||    
T  36164521 ttaattcaagtttgttagtgatttaatcatg-ttagttggttaatcacatttacttttagtttgtt 36164457  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 41879833 - 41879915
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgtta-ttgattagttacaagt 314  Q
    ||||||||| |||||||||||| |||| ||||| |||||||||||||||||   ||||||||||||| ||| ||||||||||||    
T  41879833 ttaattcaaatttgttagtgatttaattatgtt-agttggttaatcacatttacttttagtttgttacttggttagttacaagt 41879915  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 42295214 - 42295162
Alignment:
Q  233 taattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattaga 285  Q
    ||||||||||||||||||||| |||||| | ||  ||||||||||||||||||    
T  42295214 taattcaagtttgttagtgatctaatcaagcttgtttggttaatcacattaga 42295162  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 1879992 - 1879878
Alignment:
Q  234 aattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgttattgattagttacaagttccctagattttagtttgc 333  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||   |  ||||||||| |||||| ||||| ||      
T  1879992 aattcaagtttgttagtgatgtaatcatatttagtaggttaatcacattagtttttagtttgttatt---tgattacaagtttcctagaatttagcttat 1879896  T
Q  334 atttgttagggtttgtta 351  Q
      ||||||||||||||||    
T  1879895 ggttgttagggtttgtta 1879878  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 417
Target Start/End: Original strand, 37355647 - 37355758
Alignment:
Q  306 gttacaagttccctagattttagtttgcatttgttagggtttgttatcttacttgttcttcaagttacctagcatatgtgtgtatctaagctaccttcat 405  Q
    |||||||||| | ||||  |||| ||| ||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||  || |||||||||||    
T  37355647 gttacaagtttcttagagattagcttgtatttgttagggtttgttactttacttgtacttcaagttacctagcatatgtttgtacatatgctaccttcat 37355746  T
Q  406 tgtacattctca 417  Q
    |||| |||||||    
T  37355747 tgtatattctca 37355758  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 13828251 - 13828198
Alignment:
Q  229 ttgttaattcaagtttg--ttagtgatgtaatcatgtttagttggttaatcacatt 282  Q
    ||||||||||||||||   ||||||||  |||||||||||||||||||||||||||    
T  13828251 ttgttaattcaagtttaccttagtgat--aatcatgtttagttggttaatcacatt 13828198  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 30205465 - 30205593
Alignment:
Q  73 cagggacggatctattcatgttagtgtgggggttggtgcctgcactaacattttaaacttagtc-aatat-----atatagtatgtaa-ttaacacatta 165  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||||||||| ||||||  || |||||     || |||||||||| ||||||| | |    
T  30205465 cagggacggatctattcatattggtgtgggggttgatgcctgcactaacatttcaaacttgttcaaatatgtaccatgtagtatgtaatttaacacttca 30205564  T
Q  166 ttatagtaattgttatgcattttaatgtg 194  Q
    |||||||||||||||||||| ||||||||    
T  30205565 ttatagtaattgttatgcatattaatgtg 30205593  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 351
Target Start/End: Complemental strand, 41821554 - 41821429
Alignment:
Q  228 tttgttaattcaagtttgtta-gtgatgtaatcatgtttagttggttaatcacattagat-tttagtttgttattgattagttacaagttccctagattt 325  Q
    ||||||||||||||||  | | ||||| |||||||  ||||||||||||||||||||||  |||||||| |||| |||||||||||| || |||| | |     
T  41821554 tttgttaattcaagttaatcaagtgatataatcatacttagttggttaatcacattagagatttagttttttatggattagttacaaatttcctaaaata 41821455  T
Q  326 tagtttgcatttgttagggtttgtta 351  Q
    ||||||  ||||||||||||||||||    
T  41821454 tagtttatatttgttagggtttgtta 41821429  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 29258399 - 29258450
Alignment:
Q  233 taattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattag 284  Q
    ||||||||||| ||||||||| |||||| ||||  |||||||||||||||||    
T  29258399 taattcaagttagttagtgatttaatcaagtttgtttggttaatcacattag 29258450  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 42310425 - 42310366
Alignment:
Q  73 cagggacggatctattcatgttagtgtgggggttggtgcctgcactaacattttaaactt 132  Q
    |||||||||||||||| ||||| ||||||| |||| | |||| |||||||||| ||||||    
T  42310425 cagggacggatctattaatgttggtgtgggagttgtttcctggactaacatttcaaactt 42310366  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 31285940 - 31285989
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacatt 282  Q
    ||||||||||||||| |||||| |||||| | |||||||||||||||||||    
T  31285940 ttaattcaagtttgtaagtgatttaatcacg-ttagttggttaatcacatt 31285989  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 33334360 - 33334290
Alignment:
Q  229 ttgttaattcaagtttg--ttagtgatgtaatcatgtttagttggttaatcaca-ttagattttagtttgtta 298  Q
    ||||||||||||||||   ||||||||  ||||||||||||||| ||||||||| || |||||||||||||||    
T  33334360 ttgttaattcaagtttacattagtgat--aatcatgtttagttgattaatcacactttgattttagtttgtta 33334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 42310334 - 42310285
Alignment:
Q  146 agtatgtaatt-aacacattattatagtaattgttatgcattttaatgtg 194  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||||||||    
T  42310334 agtatgtaatttaacacttcattataataattgttatgcattttaatgtg 42310285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 20808791 - 20808702
Alignment:
Q  227 ttttgttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgttattga-ttagttacaagtt 315  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| ||||||||||  | |||||||||||||    
T  20808791 ttttgctaattcaagtttgttagtgatataatcatgtttagttggttaatcacatttagtttcagtttgttatgaagttagttacaagtt 20808702  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 43298622 - 43298495
Alignment:
Q  74 agggacggatctattcatgttagtgtgggggttggtgcctgcactaacattttaaacttagtc-aatatata-----tagtatgtaa-ttaacacattat 166  Q
    ||||||||||||||||||||| |||| | |||||||||| | ||||||||||| |||||  || ||||||||     |||||||||| ||||||| | ||    
T  43298622 agggacggatctattcatgttggtgtagaggttggtgcccggactaacattttgaacttgttcaaatatatacaatgtagtatgtaatttaacacttcat 43298523  T
Q  167 tatagtaattgttatgcattttaatgtg 194  Q
    ||||||||||||||||||||| ||||||    
T  43298522 tatagtaattgttatgcatttcaatgtg 43298495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 20830479 - 20830407
Alignment:
Q  227 ttttgttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattagattttagtttgttat 299  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||   ||| ||||||||||    
T  20830479 ttttgctaattcaagtttgttagtgctataatcatgtttagttggttaatcacatttagtttcagtttgttat 20830407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 5732968 - 5733017
Alignment:
Q  232 ttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacatt 282  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5732968 ttaattcaagtttgttagtgatttaatcatg-ttagttggttaatcacatt 5733017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 34224524 - 34224450
Alignment:
Q  227 ttttgttaattcaagtttgtta-gtgatgtaatcatgtttagttggttaatcacattag--attttagtttgttat 299  Q
    ||||| |||||||||||||||| ||||| |||||||  | |||||||||||||||||||   ||||||||||||||    
T  34224524 ttttgctaattcaagtttgttaagtgatataatcatact-agttggttaatcacattaggagttttagtttgttat 34224450  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 381
Target Start/End: Original strand, 17255322 - 17255469
Alignment:
Q  233 taattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattag-attttagtttgttattgattagttacaagttccctagattttagttt 331  Q
    ||||||||||||||||||||| |||| | | ||  ||||||||||||||||| | ||||||| ||  ||  || ||||||| ||  ||||||||||||||    
T  17255322 taattcaagtttgttagtgatctaattaagcttgtttggttaatcacattagaaatttagttagt--ttagtttgttacaaatttactagattttagttt 17255419  T
Q  332 gcatttgttagggtttgttatcttacttgttcttcaagttacctagcata 381  Q
        ||||||||||||||||| | | |||| |||||||| ||||||||||    
T  17255420 aaggttgttagggtttgttatatgatttgtacttcaagtaacctagcata 17255469  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 381
Target Start/End: Complemental strand, 732207 - 732053
Alignment:
Q  228 tttgttaattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattaga--ttttagtttgttattgattagttacaagttccctagattt 325  Q
    ||||||||||||||||  | ||| || |||||| | ||| ||| ||||||||||||||  |||||||||||| |||||| |||||||  | |||||| |     
T  732207 tttgttaattcaagttgttaagtaatctaatcaagcttatttgattaatcacattagagattttagtttgtttttgatttgttacaaagtacctagaata 732108  T
Q  326 tagtttgcatttgttagggtttgttatcttacttgttcttcaagttacctagcata 381  Q
    ||| ||  | ||||||||| ||||||  | |||||| | |||||| ||||||||||    
T  732107 tagcttatagttgttaggg-ttgttacataacttgtacctcaagtaacctagcata 732053  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 39622248 - 39622298
Alignment:
Q  145 tagtatgtaattaa-cacattattatagtaattgttatgcattttaatgtg 194  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  39622248 tagtatgtaatttatcactttattatagtaattgttatgcattttaatgtg 39622298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 39621321 - 39621373
Alignment:
Q  73 cagggacggatctattcatgttagtgtgggggttggtgcctgcactaacattt 125  Q
    |||||||  ||||||||||||| || |||||||||||| ||||||||||||||    
T  39621321 cagggacaaatctattcatgttggtatgggggttggtgtctgcactaacattt 39621373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 447034 - 446982
Alignment:
Q  233 taattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattaga 285  Q
    ||||||||||| ||||||||| |||||| ||||  | ||||||||||||||||    
T  447034 taattcaagttagttagtgatctaatcaagtttgttaggttaatcacattaga 446982  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 755949 - 756028
Alignment:
Q  338 gttagggtttgttatcttacttgttcttcaagttacctagc-atatgtgtgtatctaagctaccttcattgtacattctca 417  Q
    ||||||||||||||  || ||||| ||||||| |||||| | | ||| |||||| |||||||||||||||||| |||||||    
T  755949 gttagggtttgttacattgcttgtgcttcaagctacctaactagatg-gtgtatataagctaccttcattgtaaattctca 756028  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 3595291 - 3595342
Alignment:
Q  233 taattcaagtttgttagtgatgtaatcatgtttagttggttaatcacattag 284  Q
    ||||||||||| ||||||||| |||||| ||||  |||||||||||||||||    
T  3595291 taattcaagttagttagtgatttaatcaagtttgtttggttaatcacattag 3595342  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 7888308 - 7888239
Alignment:
Q  229 ttgttaattcaagtttg--ttagtgatgtaatcatgtttagttggttaatcaca-ttagattttagtttgtt 297  Q
    ||||||||||||||||   ||||||||  ||||||||||||||| ||||||||| || ||||||||||||||    
T  7888308 ttgttaattcaagtttacattagtgat--aatcatgtttagttgattaatcacactttgattttagtttgtt 7888239  T

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