View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_18 (Length: 432)
Name: NF3879_low_18
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 279
Target Start/End: Original strand, 38960739 - 38960964
Alignment:
| Q |
54 |
ttttgtatttataagtgacgtttattgattgaaaagttgtttgtacttttcttttcgtccagaatcgtacgtgattcacagaaatgttttgtatttcaaa |
153 |
Q |
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| T |
38960739 |
ttttgtatttataagtgacgattattgattgaaaagttgtttgtacttttcttttcgtccagaatcgtacgtgactcacagaaatgttttgtatttcaaa |
38960838 |
T |
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| Q |
154 |
aaataaaatccgcaaacttaattgatgtcactca-tcaatgtccaaacaatttaccgatgtcatgattcatgtcatcactcgtcaccaatagcttaattt |
252 |
Q |
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| T |
38960839 |
aaataaaatccgcaaacttaattgatgtca-tcagtcaatgtccaaacaatttaccgatgtcatgattcatgtcatcactcgtcaccaatagcttaattt |
38960937 |
T |
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| Q |
253 |
ccacaagtttgaataagtctttgagtt |
279 |
Q |
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| T |
38960938 |
ccacaagtttgaataagtttttgagtt |
38960964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 432
Target Start/End: Original strand, 38961376 - 38961535
Alignment:
| Q |
275 |
gagttacaattatttgggatgactttaaggacgactttcannnnnnncaattaattggtctaaaacaatagagggagaaaaaagaatataaaaaataaga |
374 |
Q |
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| T |
38961376 |
gagttacaactatttgggataactttgatgacaactttcatttttttcaattaattgatctaaaacaatatagagagaaaaaagaatagaaaaaataaga |
38961475 |
T |
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| Q |
375 |
atataatgtc--catgagacaaaagttgtcaaaattttttaataaaataattgtacaaat |
432 |
Q |
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| T |
38961476 |
atataatgtcaatatgagataaaagttgtcaaaaagttttaataaagtgattgtacaaat |
38961535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38960492 - 38960543
Alignment:
| Q |
1 |
actcaaaatactgctaatctcatttatttttgttaagtcatccactaatatt |
52 |
Q |
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| T |
38960492 |
actcaaaatactgctaatctcatttatttttgttaagtcatccactaatatt |
38960543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 432
Target Start/End: Complemental strand, 17363347 - 17363240
Alignment:
| Q |
328 |
attggtctaaaacaatagagggagaaaaaagaatataaaaaataagaatataatgt--ccatgagaca-aaagttgtcaaaattttttaataaaataatt |
424 |
Q |
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| T |
17363347 |
attggtccaaaacaatagagagagaaaaaagaagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtgatt |
17363248 |
T |
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| Q |
425 |
gtacaaat |
432 |
Q |
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| T |
17363247 |
gtacaaat |
17363240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 35425634 - 35425681
Alignment:
| Q |
336 |
aaaacaatagagggagaaaaaagaatataaaaaataagaatataatgt |
383 |
Q |
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| T |
35425634 |
aaaacaatagagagagaaaaaagaagacaaaaaataagaatataatgt |
35425681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 432
Target Start/End: Complemental strand, 11068542 - 11068435
Alignment:
| Q |
328 |
attggtctaaaacaatagagggagaaaaaagaatataaaaaataagaatataatgt--ccatgagaca-aaagttgtcaaaattttttaataaaataatt |
424 |
Q |
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| T |
11068542 |
attggtctaaaacaatagagagagaaaaatgaagaaagagaataagaatataatgtgaacatgagagagaaagttgtcaaaaaattgtaataaagtggtt |
11068443 |
T |
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| Q |
425 |
gtacaaat |
432 |
Q |
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| T |
11068442 |
gtacaaat |
11068435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 12489535 - 12489590
Alignment:
| Q |
328 |
attggtctaaaacaatagagggagaaaaaagaatataaaaaataagaatataatgt |
383 |
Q |
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| T |
12489535 |
attggtccaaaacaatagagagagaaaaaagaagagataaattaagaatataatgt |
12489590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 9277565 - 9277617
Alignment:
| Q |
328 |
attggtctaaaacaatagagggagaaaaaagaatataaaaaataagaatataa |
380 |
Q |
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| T |
9277565 |
attggtccataacaatagagagagaaaaaagaaaatagaaaataggaatataa |
9277617 |
T |
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