View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_2 (Length: 571)
Name: NF3879_low_2
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Original strand, 19755263 - 19755795
Alignment:
| Q |
17 |
tcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaagcattttctctcggtcttcatcatctt |
116 |
Q |
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| T |
19755263 |
tcattttcttcatcaatgtgttgttgatcatcttcaacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctt |
19755362 |
T |
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| Q |
117 |
tgggaggactagagtcaactatcatattgtcctcaaagatggggtcaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
216 |
Q |
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| T |
19755363 |
tgggaggactagagtcaattatcatattgtcctcaaagatggggttaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
19755462 |
T |
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| Q |
217 |
gctaactttagcacccttaaacacataaaaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagatacct |
316 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755463 |
gctaacttcagcaccctgaaacacattaaaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagatacct |
19755562 |
T |
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| Q |
317 |
tcgacgcattatctccaacgcatgaatgtgcactagcaggtttgccttctttacgccctcgatttttctttatggggcccttcacagctgcttctccatc |
416 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
19755563 |
tcgacgcattatctccaacgcatgaatgtgtactactaggtttgccttgtttacgccctcgatttttctttatggggcccttcacaacagcttttccatc |
19755662 |
T |
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| Q |
417 |
aattacattgttaccattatctggattttcttgagaatgattgacggaattgtgctcacttgaatctttgggtttttcttgagcatgttttcttttcttc |
516 |
Q |
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| T |
19755663 |
agttacattgttaccattatctagattttcttgagaatgattgacggaattttgctcactagaatctttgggttttttttgagcatgttttcttttcttc |
19755762 |
T |
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| Q |
517 |
tccttctcaattcgaatctcataaacagttgct |
549 |
Q |
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| T |
19755763 |
tccttctcaattcgaatctcagaaacaattgct |
19755795 |
T |
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