View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3879_low_20 (Length: 409)
Name: NF3879_low_20
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_20 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0074 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 48291 - 48664
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48291 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
48390 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48391 |
gataaacaaaccttgtatagtcttgcacaatgtacgagagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
48490 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctcagcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48491 |
ggtcaaatttgggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctcagct |
48590 |
T |
|
| Q |
320 |
gcctttccaattacnnnnnnntgcaagtaaggttcgtattgttgattattacgttgaaattatgaggtttataa |
393 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48591 |
gcctttccaattacaaaaaaatgcaagtaaggttcgtattgttgattattacgttgaaattatgaggtttataa |
48664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 15651 - 15352
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15651 |
aaactggttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaat |
15552 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
15551 |
gataaacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaattccat |
15452 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctcagcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
15451 |
ggtcaaatttgggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccctttttacatggagggtgacgaagctcagcc |
15352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 22205462 - 22205761
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22205462 |
aaactggttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaat |
22205561 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
22205562 |
gatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaattccat |
22205661 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctcagcc |
319 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
22205662 |
ggtcaaatttcggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccctttttacatggagggtgacgaagctcagcc |
22205761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 20085698 - 20085404
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
20085698 |
aaacttgttcactagtacattatcaaatcagttatctcaacttgcgaatgatacaggggacagtggtgaaagatataagactaattcattaaaactaaat |
20085599 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20085598 |
gatgtacaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgcacttcttgtctaaatgatgtgatcaatacagcgattccat |
20085499 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
20085498 |
ggtcaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatggacggcgacgaagct |
20085404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 20237611 - 20237330
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
20237611 |
aaactcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaat |
20237512 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20237511 |
gataaacaaaccttgtatagtcttggacaatgtacgagagatttgtctagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccat |
20237412 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatgga |
301 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
20237411 |
ggccaaatttgggcagtgttgggggaagaattatgtatcctagctgtaatctgaggtttgaattgtttcctttttacatgga |
20237330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 22131595 - 22131314
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
22131595 |
aaactcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaat |
22131496 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22131495 |
gataaacaaaccttgtatagtcttggacaatgtacgagagatttgtctagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccat |
22131396 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatgga |
301 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
22131395 |
ggccaaatttgggcagtgttgggggaagaattatgtatcctagctgtaatctgaggtttgaattgtttcctttttacatgga |
22131314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 24385676 - 24385978
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagt--gatgatagatataagactaattcattaaaactga |
117 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |||||| | ||| |||||||||||||||||||||||||| | |
|
|
| T |
24385676 |
aaacttgttcactaatacattatggaatcagttaaatcaacttgccaatgatacaggagacagtacggtgaaagatataagactaattcattaaaactaa |
24385775 |
T |
|
| Q |
118 |
atgat----aa--acaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagc |
211 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
24385776 |
atgatgtacaagtacaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgcgcttcttgtctaaatgatgtgatcgttacagc |
24385875 |
T |
|
| Q |
212 |
aattccatggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaa |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24385876 |
aattccatggtaaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatggacggcgacgaa |
24385975 |
T |
|
| Q |
312 |
gct |
314 |
Q |
| |
|
||| |
|
|
| T |
24385976 |
gct |
24385978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 18997213 - 18996926
Alignment:
| Q |
36 |
acattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgt |
135 |
Q |
| |
|
||||||| ||||||||| || |||||||| |||| || ||| |||||| ||| ||||||| ||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
18997213 |
acattattgaatcagttttccaaacttgcatatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgt |
18997114 |
T |
|
| Q |
136 |
atagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccatggtcaaatttgggtag |
235 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||||| || |||||||||| ||||||||| || |||||||||||||||||| ||| ||| |
|
|
| T |
18997113 |
atagtcttggacaatgtacgcgagatttgtctagtgaggattgcacttcttgtctaaaggatgtgatcaatagagcaattccatggtcaaaattgagtaa |
18997014 |
T |
|
| Q |
236 |
tgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctcagccgcct |
323 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
18997013 |
tgttaggggaagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatggagggtgacgaagctctgccgcct |
18996926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 18981222 - 18981092
Alignment:
| Q |
184 |
cttgtctaaatgatgtgatcgttacagcaattccatggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaatt |
283 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
18981222 |
cttgtctaaatgatgtgattactacagcaattccatggtcaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttgaatt |
18981123 |
T |
|
| Q |
284 |
gttccgtttttacatggagggcgacgaagct |
314 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |
|
|
| T |
18981122 |
gttccaattttacatggacggcgacgaagct |
18981092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 21971579 - 21971284
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||| | | ||||||| ||||| |||||| |||||| |||| ||| ||| ||| || || | |||| || |||||||||| ||||| |
|
|
| T |
21971579 |
aaacttgttcacaaatgcattatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaat |
21971480 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||| | | |||||||||||| ||||| || || |||||||| |
|
|
| T |
21971479 |
gataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatgatcagtagagaaattccat |
21971380 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctc |
315 |
Q |
| |
|
||||| |||||| |||||||| |||||||| || || |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
21971379 |
ggtcatttttgggaagtgttggaggaagaatcatatatcctagctgcaatctgaggtttgaattgttcaaattttatatggacggcgacgaagctc |
21971284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 20205018 - 20204723
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||| | | ||||||| ||||| ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | ||||| |
|
|
| T |
20205018 |
aaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaat |
20204919 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||| ||||||||| | | | || ||| | | |||||||||||| ||||| || || |||||||| |
|
|
| T |
20204918 |
gataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccat |
20204819 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctc |
315 |
Q |
| |
|
||||| |||||| |||||||| |||||||| | || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
20204818 |
ggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctc |
20204723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 22099041 - 22098746
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||| | | ||||||| ||||| ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | ||||| |
|
|
| T |
22099041 |
aaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaat |
22098942 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||| ||||||||| | | | || ||| | | |||||||||||| ||||| || || |||||||| |
|
|
| T |
22098941 |
gataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccat |
22098842 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctc |
315 |
Q |
| |
|
||||| |||||| |||||||| |||||||| | || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22098841 |
ggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctc |
22098746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 18981333 - 18981218
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||| ||||| |
|
|
| T |
18981333 |
aaacttgttcactagtgcattatcaaatcaattatctcaacttgcgaatgatacaggggacagtgatgaaatgtatctgactaattcattaaaaatgaat |
18981234 |
T |
|
| Q |
120 |
gataaacaaaccttgt |
135 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
18981233 |
gatacacaaaccttgt |
18981218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 5818 - 6099
Alignment:
| Q |
20 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818 |
aaacttgttcactagtacattatccaatgagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
5917 |
T |
|
| Q |
120 |
gataaacaaaccttgtatagtcttgcacaatgtacgggagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
219 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
5918 |
gatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcgctacttgtctaaatgatgtgatcgctacagcaattccct |
6017 |
T |
|
| Q |
220 |
ggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttacatgga |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6018 |
ggtcaaatttgggtagtgttgggggcagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatgga |
6099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 10402826 - 10402739
Alignment:
| Q |
210 |
gcaattccatggtcaaatttgggtagtgttgggggaagaattatctaccctagctgcaatctgaggtttgaattgttccgtttttaca |
297 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| || |||||| || | || ||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
10402826 |
gcaattccttggtcttatttgggaagtgtaggtggaagagttttatatcctagttgcaatatgaggtttgaattgttccaattttaca |
10402739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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