View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_21 (Length: 400)
Name: NF3879_low_21
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 115 - 364
Target Start/End: Complemental strand, 29306227 - 29305974
Alignment:
| Q |
115 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29306227 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagcgaagattcccacttctaaaaccatccaaactcat |
29306128 |
T |
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| Q |
215 |
accacttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagct |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29306127 |
accacttcgtgaaaggaagcgctctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagct |
29306028 |
T |
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| Q |
315 |
tagaggttcttcttttctattttttagt-----tttgaaggtttagaacttctga |
364 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
29306027 |
tagaggttcttc-tttctattttttagttttgatttgaaggtttagaacttctga |
29305974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 115 - 321
Target Start/End: Complemental strand, 29297482 - 29297276
Alignment:
| Q |
115 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcat |
214 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||| ||||||||| | |||| ||||||||||||||||| |
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| T |
29297482 |
acaaaattgattaaaagtatacaagaaaagaagttgaatcagatgaagaggatgatgaaccaaagcgaagattcctatttcttaaaccatccaaactcat |
29297383 |
T |
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| Q |
215 |
accacttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactctccgaatatctccatcataatcgccaccattatcatgattctagct |
314 |
Q |
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||| ||||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||| |||| |
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| T |
29297382 |
accccttcgtgaaaggaagcgctcagtcgcccttgtcagcacagccgtgtactctatgaatatctccgtcataaacgccaccattatcatgattcaagct |
29297283 |
T |
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| Q |
315 |
tagaggt |
321 |
Q |
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||||||| |
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| T |
29297282 |
tagaggt |
29297276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 29306474 - 29306374
Alignment:
| Q |
22 |
cacagacctcaactgaagaataattcacggca--agggaaaaattgactatatgataaa-tatgtgtcataattacacatcaaatgcaagaatctaacaa |
118 |
Q |
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|||| |||||||||||||||||||||| || | ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29306474 |
cacaaacctcaactgaagaataattcatggtataagggaaaaatttactatataataaaatatgtgtcataattacacatcaaatgcaagaatctaacaa |
29306375 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
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|
| T |
29306374 |
a |
29306374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 29297714 - 29297627
Alignment:
| Q |
22 |
cacagacctcaactgaagaataattcacggcaagggaaaaattgactatatgat-aaatatgtgtcataattacacatcaaatgcaag |
108 |
Q |
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|||| |||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |
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| T |
29297714 |
cacaaaccttaactgaagaataattcatggcaagggaaaaattgactatataataaaatatgtgtcacaattacacatcaaatgcaag |
29297627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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