View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_22 (Length: 391)
Name: NF3879_low_22
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 18006697 - 18006984
Alignment:
| Q |
1 |
cctttgggatctggcaagaaggatatgtatgaagaagaaagacaagtaaactagttagaagtgttgtacttgttgggttgaaattgggcatgtttcctct |
100 |
Q |
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| T |
18006697 |
cctttgggatctggcaagaaggatatgtatgaagaagaaagacaagtaaactagttagaagtgttgtacttgttgggttgaaattgggcatgtttcctct |
18006796 |
T |
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| Q |
101 |
attgaaacccaaaccaacccacttatataaatgttgtattctcaatgaagcta-ttttttcacactctagaatcatcnnnnnnnatcacctttatttttg |
199 |
Q |
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| T |
18006797 |
attgaaacccaaaccaacccacttatataaatgttgtattctcaatgaagctatttttttcacactctagaatcatctt-----------tttttttttg |
18006885 |
T |
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| Q |
200 |
gtgagacaaaaagaaacaggtgttacaataaatacagagagtaacaaccagcaccaaactctactactctaccatcaa---tattcattcacaagtcat |
295 |
Q |
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| T |
18006886 |
gtgagacaaaaagaaacaggtgttacaataaatacagagagtaacaaccagcaccaaactctactactctaccatcaatattattcattcacaagtcat |
18006984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 18007015 - 18007065
Alignment:
| Q |
325 |
ggtttagagtaatattgtgagtgggccatggacacagttccctaaactttg |
375 |
Q |
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| T |
18007015 |
ggtttagagtaatattgtgagtgggccatggacacagttccctaaactttg |
18007065 |
T |
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