View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_23 (Length: 388)
Name: NF3879_low_23
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 18934235 - 18933876
Alignment:
| Q |
13 |
agcataggtggtgtcgctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18934235 |
agcataggtggtgtcgctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgagaaacacggccatcgagcttggacggtttggtattc |
18934136 |
T |
|
| Q |
113 |
gggtgaattgtgtgtcaccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18934135 |
gggtgaattgtgtgtcaccttatattgttgcaactccgttggttaagaaatattttaagctcgatgatgatgatgatgttttagatgtttattctaacct |
18934036 |
T |
|
| Q |
213 |
aaagggtgctaatcttgtgccaaaagatgtggctgaagctgctctatacttgggaagtgatgagtctaagtatgttagtggtcacaatcttgtcatcgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934035 |
aaagggtgctaatcttgtgccaaaagatgtggctgaagctgctctatacttgggaagtgatgagtctaagtatgttagtggtcacaatcttgtcatcgat |
18933936 |
T |
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| Q |
313 |
ggaggattcacggttgtaaataatgggttttgtgtgtttggagaatctgtctaaatatgt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18933935 |
ggaggattcacggttgtaaataatgggttttgtgtgtttggagaatctgtctaaatatgt |
18933876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 18946419 - 18946091
Alignment:
| Q |
14 |
gcataggtggtgtcgctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcg |
113 |
Q |
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| T |
18946419 |
gcataggtggtgtggcttcacatgcctacacaagttcaaagcacgccgttgttgggctaatgaaaaatacggccatcgagcttggaccgtacggtattcg |
18946320 |
T |
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| Q |
114 |
ggtgaattgtgtgtcaccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaaccta |
213 |
Q |
| |
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||||||||||||||||||||| |||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
18946319 |
agtgaattgtgtgtcaccttatgttgtcggaactccgttggctaagaatttctttaagct---tgatgatgatggagttctagatgtttattctaaccta |
18946223 |
T |
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| Q |
214 |
aagggtgctaatcttgtgccaaaagatgtggctgaagctgctctatacttgggaagtgatgagtctaagtatgttagtggtcacaatcttgtcatcgatg |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||| || | |||| |
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| T |
18946222 |
aagggtgctaatcttttgccaaaagatgtggctgaagctgctttgtatttgggaagtgatgagtctaaatatgttagtggtcacaatctagttgtagatg |
18946123 |
T |
|
| Q |
314 |
gaggattcacggttgtaaataatgggttttgt |
345 |
Q |
| |
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| ||| | ||||| | ||||||||| |||||| |
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| T |
18946122 |
gtggacttacggtcggaaataatggattttgt |
18946091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 28 - 370
Target Start/End: Complemental strand, 18929546 - 18929207
Alignment:
| Q |
28 |
gctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattcgggtgaattgtgtgt |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| | || |||||||||||||||||||||| |
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| T |
18929546 |
gctccacatgcctacacaagttcaaagcacgccgttgttgggctgatgagaaacacggctatcgagcttgggccattcggtattcgggtgaattgtgtgt |
18929447 |
T |
|
| Q |
128 |
caccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacctaaagggtgctaatct |
227 |
Q |
| |
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| |||||| || |||| |||||| |||||| || | ||||||||| |||||||| || | ||||||| ||| |||||||||||||||| ||||||| |
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| T |
18929446 |
cgccttattttcttgcgactccgatggttacaaatttctttaagct---tgatgatggtggagctctagatattttttctaacctaaagggtactaatct |
18929350 |
T |
|
| Q |
228 |
tgtgccaaaagatgtggctgaagctgctctatacttgggaagtgatgagtctaagtatgttagtggtcacaatcttgtcatcgatggaggattcacggtt |
327 |
Q |
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|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| || |
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| T |
18929349 |
tgtgccaaaagatgtggctgaagctgctttgtatttgggaagtgatgagtctaagtatgttagtggtcttaatcttgtcatagatggaggagtcagtgtc |
18929250 |
T |
|
| Q |
328 |
gtaaataatgggttttgtgtgtttggagaatctgtctaaatat |
370 |
Q |
| |
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| ||| ||||| ||||||||||||| | ||||||||| ||||| |
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| T |
18929249 |
gcaaacaatggattttgtgtgtttgaacaatctgtctgaatat |
18929207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 18938919 - 18938563
Alignment:
| Q |
13 |
agcataggtggtgtcgctccacatgcctacacaagtgcaaagcacgccgttgttgggctgatgaggaacacggccatcgagcttggacggtttggtattc |
112 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||| ||||||| || ||| | ||||||||||| |||||||| ||||| ||||||| ||| |||||| |
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| T |
18938919 |
agcataggtggtatggcttcacatgcctacacaagttcaaagcatgctgttttggggctgatgagaaacacggcaatcgaacttggaccgttcagtattc |
18938820 |
T |
|
| Q |
113 |
gggtgaattgtgtgtcaccttatattgttgcaactccgttggttaagaaatactttaagctcgatgatgatgatgatgttctagatgtttattctaacct |
212 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||| ||| |||||| | ||| ||||| ||||||||| | |||||| ||||||||||||| |
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| T |
18938819 |
gggtgaattgtgtttcaccttatattgtcgccacaccgatggctaagaacttcttaaagct---tgatgatgaagggcttctagggctttattctaacct |
18938723 |
T |
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| Q |
213 |
aaagggtgctaatcttgtgccaaaagatgtggctgaagctgctctatacttgggaagtgatgagtctaagtatgttagtggtcacaatcttgtcatcgat |
312 |
Q |
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||||||| ||||||||||||| |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||||||||||||||||||| | ||| |
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| T |
18938722 |
aaagggtactaatcttgtgcctaaagatgtggctgaagcttctctttacttgggcagtgacgaatctaagtatgttagtggtcacaatcttgtcgtagat |
18938623 |
T |
|
| Q |
313 |
ggaggattcacggttgtaaataatgggttttgtgtgtttggagaatctgtctaaatatgt |
372 |
Q |
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|||| | ||| || || ||||| |||| |||||||||| ||||||||||||||||| |
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| T |
18938622 |
ggagcagtcagtgtctctaacaatggattttctgtgtttggacaatctgtctaaatatgt |
18938563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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