View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3879_low_26 (Length: 365)
Name: NF3879_low_26
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 1266964 - 1267302
Alignment:
| Q |
11 |
cacagataccagacacaacactaaagaaagctattaaatgtctcagacacttacacgtgttagacactcaaacatgctttcaacttgaagtgtcagtgct |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1266964 |
cacagatactagacacaacactaaagaaagctattaaatgtcccagacacttacaagtgtcagacactcaaacatgctttcaacttgaagtgtcagtgtt |
1267063 |
T |
|
| Q |
111 |
gcatagaaaaacattgatgaaatgttatttgtagagctatgcagggcatatggtggaatgtactaaagagatgttagaatcactacaaaaagggttggag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1267064 |
gcatagaaaaacattgatgaaatgttatttgtagagctatgcagggcatatggtggaatgtactaaagagatgttagaatcactgcaaaaagggttggag |
1267163 |
T |
|
| Q |
211 |
tgtggacaaagtgaggtggagattggtgagtacatggctaaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaagga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1267164 |
tgtggacaaagtgaggtggagattggtgagtacatggctaaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaagga |
1267263 |
T |
|
| Q |
311 |
aaatattccatctcctcacagttctccagactctttgtg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1267264 |
aaatattccatctcctcacagttctccagactctttgtg |
1267302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 5364536 - 5364621
Alignment:
| Q |
250 |
aaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttct |
335 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| || |||||||||||||| || |||||| |||||||||||||| ||||| |
|
|
| T |
5364536 |
aaacttagtgcagatgttatctctagaactgagttttgtataagctaccaaaaggtaaagaaaatgttccatctcctcactgttct |
5364621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 5375991 - 5376059
Alignment:
| Q |
264 |
tattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagtt |
333 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
5375991 |
tattatctctagagctgagtttg-tgcaaactaccaaaaaggaaagaaaatgttccatctcctcacagtt |
5376059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 5370502 - 5370584
Alignment:
| Q |
257 |
ctgcagatattatctctagaactga---gtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctc |
336 |
Q |
| |
|
|||||||||||||| ||||| |||| || |||| ||| ||| |||||||| | |||||| ||||||||||||| ||||||| |
|
|
| T |
5370502 |
ctgcagatattatccctagagctgatcagtctggtacaaactagcaaaaggggaagaaaatgttccatctcctcatagttctc |
5370584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 6972411 - 6972493
Alignment:
| Q |
248 |
ctaaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcaca |
330 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || |||||||| ||||||||| | ||||||| || ||||||||| |
|
|
| T |
6972411 |
ctaaactcactgcagatattatctctaaaactgagtttagtacaagctacaaaaagggaaagcaaatatttcacctcctcaca |
6972493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University