View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_28 (Length: 358)

Name: NF3879_low_28
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_28
NF3879_low_28
[»] chr6 (3 HSPs)
chr6 (2-101)||(21389291-21389389)
chr6 (265-343)||(21388774-21388852)
chr6 (96-154)||(21388962-21389020)
[»] chr3 (1 HSPs)
chr3 (68-132)||(41122418-41122478)
[»] chr1 (1 HSPs)
chr1 (68-135)||(44198030-44198093)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 21389389 - 21389291
Alignment:
Q  2 tacatttatcctacaattaacttccttttttaagttaacaattgtctttatatttgtttttactcattatccatacaacttagtcaccatcactcccaca 101  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21389389 tacatttatcctacaattaacttccttttttt-gttaacaattgtctttaaatttgtttttactcattatccctacaacttagtcaccatcactcccaca 21389291  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 21388852 - 21388774
Alignment:
Q  265 gttgaataatggaattaaaaagaagtttacatcgtgagattaaaggtagaaccgcccaaattgcaaattttgtaatagc 343  Q
    ||||||||||| ||| |||| ||||||||||| |||||||||| ||| ||||||| |||||||||||| ||||||||||    
T  21388852 gttgaataatgaaatgaaaaggaagtttacattgtgagattaacggtggaaccgctcaaattgcaaatgttgtaatagc 21388774  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 21389020 - 21388962
Alignment:
Q  96 cccacaaaaatatatgcactccttttctttacgccttcttattaggttcactccctgtg 154  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  21389020 cccacaaaaatatatgcactccttttctttatgccttattattaggttcacaccctgtg 21388962  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 41122418 - 41122478
Alignment:
Q  68 ttatccatacaacttagtcaccatcactcccacaaaaatatatgcactccttttctttacgcctt 132  Q
    |||||| ||||||||||||||||||||| ||||||||    ||||| |||||||||||| |||||    
T  41122418 ttatccctacaacttagtcaccatcactaccacaaaa----atgcagtccttttctttatgcctt 41122478  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 44198093 - 44198030
Alignment:
Q  68 ttatccatacaacttagtcaccatcactcccacaaaaatatatgcactccttttctttacgccttctt 135  Q
    |||||| |||||||||||||||| | || ||||||||||    ||| |||||||||||||||||||||    
T  44198093 ttatccctacaacttagtcaccaccgctaccacaaaaat----gcagtccttttctttacgccttctt 44198030  T

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