View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_29 (Length: 352)
Name: NF3879_low_29
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 37559087 - 37559430
Alignment:
| Q |
1 |
tttaggaccactttcttaattttgagaagaaaaagtagtgtatgattatttatttgaaagattttta-------ttttaagttgttgacaagttattaaa |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
37559087 |
tttaggaccactttcttaattttgagaagaaaaagtagtgtatgattatttatttgaaagactttttgaaagatttttaagttgttgacaagttattaaa |
37559186 |
T |
|
| Q |
94 |
acactttgaaataaagtcaactcgatgctataaatcttcctgccttgattttacatgtacccttttgctacaaactatataactttgtgattgtgaagat |
193 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37559187 |
acactttgaaataaagtcaactcaatgctataaatcttcctgccttgattttacatgtacccttttgctacaaactagataactttgtgattgtgaagat |
37559286 |
T |
|
| Q |
194 |
gagcaccacattcacaaattttccttctgccctcaaacctgtttcttaaaacaattggtatgttgacaccgctaaccacatgaagtgtgattcttgtagc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37559287 |
gagcaccacattcacaaattttccttctgccctcaaaccagtttcttaaaacaattggtatgttgacaccgctaaccacatgaagtgtgattcttgtagc |
37559386 |
T |
|
| Q |
294 |
atttctctatttagcaccactttctacaacaccctttccccttt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37559387 |
atttctctatttagcaccactttctacaacaccctttccccttt |
37559430 |
T |
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