View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_3 (Length: 557)
Name: NF3879_low_3
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 7692093 - 7691565
Alignment:
| Q |
17 |
ataaacttggtgagagcagtaagattcaaagtaaaaaatttgaatcatatat--tcattacaattaaaaatgtatcttaaaagcatgcaaatatattaat |
114 |
Q |
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| T |
7692093 |
ataaacttggtaagagcagtaagattcaaagtaaaaaatttgaatcatatatattcattacaattaaaaatctatcttaaaagcatgcaaatatattaat |
7691994 |
T |
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| Q |
115 |
tcttggatgtagccgttatactttgtacactgtaatttaagaggcggggtaagcaaccaacttttaatatgaatctgaaagaagcacttatgattcatga |
214 |
Q |
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| T |
7691993 |
tcttggatgtagccgttatactttgtacactgtaatttaagaggcggggtaagcaaccaacttttaatatgaatctcaaagaagcacttatgattcatga |
7691894 |
T |
|
| Q |
215 |
cnnnnnnnnntattaaaagcttttaaggactagtctctaaatgaacaataaatttattttaattgagaaactcctacatatgcagcatgagttctcatta |
314 |
Q |
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| T |
7691893 |
caaaaaaaa-tattaaaagcttttaaggactagtctctaaatgaacaataaatttattttaattgagaaactcctatatatgcagcatgagttctcatta |
7691795 |
T |
|
| Q |
315 |
atgttcttatgaagtataaaggattaaacgtaaagtgttagtttaagcacgaattcgaatcgcgaaaagcttttaaaaactgccactaaccgctctcact |
414 |
Q |
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| T |
7691794 |
atgttcttatgaagtataaaggattaaacgtaaagtgttagtttaagcacgaattcaaatcgcgaaaagcttttaaaaactgccactaaccgctctcact |
7691695 |
T |
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| Q |
415 |
ttcatcaacagaacagaacatcacttttctattatgatcttcttctaacagnnnnnnnnnntgaagatactactcattctcatttcactttatgctctct |
514 |
Q |
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| T |
7691694 |
ttcatcaacagaacagaacatcacttttctattatgatcttcttctaacagaaaaaaaaaatgaagatactactcattctcatttcactttatgttctct |
7691595 |
T |
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| Q |
515 |
ctttcttcccaatatcatactccacaggtt |
544 |
Q |
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| T |
7691594 |
ctttcttcccaatatcatactccacaggtt |
7691565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 13890360 - 13890292
Alignment:
| Q |
476 |
tgaagatactactcattctcatttcactttatgctctctctttcttcccaatatcatactccacaggtt |
544 |
Q |
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| T |
13890360 |
tgaagatactagtcattctcatttcactctatactctctctttcttcccattatcatatcccacaggtt |
13890292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 14030485 - 14030417
Alignment:
| Q |
476 |
tgaagatactactcattctcatttcactttatgctctctctttcttcccaatatcatactccacaggtt |
544 |
Q |
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||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||| |
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| T |
14030485 |
tgaagatactagtcattctcatttcactctatactctctctttcttcccattatcatatcccacaggtt |
14030417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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