View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_31 (Length: 344)
Name: NF3879_low_31
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 19755286 - 19754963
Alignment:
| Q |
1 |
acaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcac |
100 |
Q |
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| T |
19755286 |
acaacacattgatgaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcac |
19755187 |
T |
|
| Q |
101 |
actgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactccagtgacaa |
200 |
Q |
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| T |
19755186 |
actgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactcgagtgacaa |
19755087 |
T |
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| Q |
201 |
attctaccactgtgactataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctccc |
300 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755086 |
attctaccagtgtgacaataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctccc |
19754987 |
T |
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| Q |
301 |
ttcaaatactgacacagagtcttc |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
19754986 |
ttcaaatactgacacagagtcttc |
19754963 |
T |
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