View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_35 (Length: 308)

Name: NF3879_low_35
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_35
NF3879_low_35
[»] chr3 (12 HSPs)
chr3 (84-226)||(6288797-6288939)
chr3 (83-216)||(15601538-15601671)
chr3 (83-216)||(18510342-18510475)
chr3 (83-216)||(18522083-18522216)
chr3 (36-83)||(48773444-48773491)
chr3 (83-205)||(10573255-10573377)
chr3 (83-216)||(13248028-13248161)
chr3 (85-205)||(15351648-15351768)
chr3 (37-84)||(38744196-38744243)
chr3 (37-84)||(9770701-9770748)
chr3 (37-83)||(12270130-12270176)
chr3 (37-83)||(30099142-30099188)
[»] chr7 (12 HSPs)
chr7 (83-216)||(12750246-12750379)
chr7 (83-216)||(15151864-15151997)
chr7 (124-216)||(11536715-11536807)
chr7 (40-86)||(13962833-13962879)
chr7 (119-216)||(29327239-29327336)
chr7 (36-83)||(20018505-20018552)
chr7 (44-83)||(3329133-3329172)
chr7 (40-83)||(15632713-15632755)
chr7 (36-83)||(46175630-46175677)
chr7 (36-83)||(2387406-2387454)
chr7 (36-68)||(25159727-25159759)
chr7 (37-85)||(27566248-27566296)
[»] scaffold0234 (2 HSPs)
scaffold0234 (83-216)||(2974-3107)
scaffold0234 (83-216)||(11865-11998)
[»] chr6 (10 HSPs)
chr6 (83-216)||(17685122-17685255)
chr6 (83-216)||(27278137-27278270)
chr6 (83-216)||(27296629-27296762)
chr6 (83-216)||(27303028-27303161)
chr6 (83-200)||(29315270-29315387)
chr6 (36-85)||(93321-93370)
chr6 (83-216)||(27381905-27382038)
chr6 (83-216)||(27472288-27472421)
chr6 (37-83)||(8068491-8068537)
chr6 (37-83)||(4107886-4107932)
[»] chr4 (17 HSPs)
chr4 (83-216)||(5713368-5713501)
chr4 (83-216)||(10621986-10622119)
chr4 (83-216)||(19920073-19920206)
chr4 (83-216)||(18268489-18268622)
chr4 (36-84)||(13479805-13479853)
chr4 (36-84)||(13630098-13630146)
chr4 (83-216)||(26969888-26970021)
chr4 (40-83)||(21397831-21397874)
chr4 (40-83)||(37622108-37622151)
chr4 (36-83)||(45141338-45141385)
chr4 (40-86)||(1585155-1585201)
chr4 (37-83)||(45958550-45958596)
chr4 (36-83)||(54824966-54825013)
chr4 (45-83)||(11207800-11207838)
chr4 (45-83)||(35461195-35461233)
chr4 (37-83)||(39265007-39265053)
chr4 (36-83)||(11170036-11170083)
[»] scaffold0032 (1 HSPs)
scaffold0032 (83-200)||(110768-110885)
[»] chr8 (13 HSPs)
chr8 (83-216)||(22170909-22171042)
chr8 (83-216)||(28554304-28554437)
chr8 (83-216)||(24642066-24642199)
chr8 (36-68)||(16265641-16265673)
chr8 (36-68)||(16289401-16289433)
chr8 (36-83)||(19297814-19297861)
chr8 (40-83)||(23118498-23118541)
chr8 (37-83)||(3699067-3699113)
chr8 (37-83)||(10947378-10947424)
chr8 (37-83)||(10955460-10955506)
chr8 (36-84)||(6589358-6589405)
chr8 (36-83)||(7002868-7002916)
chr8 (37-85)||(14745232-14745280)
[»] chr5 (4 HSPs)
chr5 (83-216)||(19707872-19708005)
chr5 (83-216)||(24696143-24696277)
chr5 (36-68)||(29745431-29745463)
chr5 (37-83)||(19509427-19509473)
[»] scaffold0019 (2 HSPs)
scaffold0019 (84-216)||(35531-35663)
scaffold0019 (124-205)||(35099-35180)
[»] chr1 (13 HSPs)
chr1 (83-215)||(22657876-22658008)
chr1 (83-216)||(3854460-3854593)
chr1 (83-216)||(27278398-27278531)
chr1 (36-83)||(4232480-4232527)
chr1 (40-83)||(17150641-17150684)
chr1 (37-84)||(20572085-20572132)
chr1 (36-83)||(24851472-24851519)
chr1 (37-83)||(20294087-20294133)
chr1 (36-84)||(21964318-21964366)
chr1 (36-83)||(9292972-9293019)
chr1 (37-68)||(20075715-20075746)
chr1 (37-68)||(20300606-20300637)
chr1 (88-136)||(9473856-9473904)
[»] scaffold0063 (1 HSPs)
scaffold0063 (83-216)||(4948-5081)
[»] chr2 (5 HSPs)
chr2 (36-85)||(27273436-27273485)
chr2 (40-83)||(35410-35453)
chr2 (37-83)||(11467324-11467370)
chr2 (36-86)||(24425633-24425683)
chr2 (36-68)||(27038536-27038568)
[»] scaffold0433 (1 HSPs)
scaffold0433 (124-216)||(6569-6661)
[»] scaffold0555 (1 HSPs)
scaffold0555 (36-83)||(470-517)
[»] scaffold0001 (1 HSPs)
scaffold0001 (36-70)||(511419-511453)
[»] scaffold0499 (1 HSPs)
scaffold0499 (40-83)||(150-193)
[»] scaffold0320 (1 HSPs)
scaffold0320 (36-83)||(2282-2329)
[»] scaffold0466 (1 HSPs)
scaffold0466 (37-83)||(12521-12567)
[»] scaffold0203 (1 HSPs)
scaffold0203 (83-216)||(24180-24314)
[»] scaffold0390 (1 HSPs)
scaffold0390 (131-216)||(7587-7672)
[»] scaffold0705 (1 HSPs)
scaffold0705 (149-205)||(452-508)
[»] scaffold0101 (1 HSPs)
scaffold0101 (36-83)||(5585-5632)
[»] scaffold0018 (1 HSPs)
scaffold0018 (37-89)||(65915-65967)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 6288939 - 6288797
Alignment:
Q  84 cattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgta 183  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6288939 cattgtaaaggagttataaggatgacaacttccacatcggtgtatagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgta 6288840  T
Q  184 agttgtaaaagtacaagtttcagagagttgttgctgatctttc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6288839 agttgtaaaagtacaagtttcagagagttgttgctgatctttc 6288797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 15601671 - 15601538
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||  |||||||||| ||||||  ||||||||| ||||     
T  15601671 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaacttggaataaatgttatgctaggatatcaactatga 15601572  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  15601571 aatttgtaaaagtacaagcttcaaatagttgttg 15601538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 18510342 - 18510475
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || || | ||||||||||||||| | |  ||| |||||||||| ||||||  ||||||||| ||||     
T  18510342 acattgtaaatgagttacaatgatgttgactttcatattggtgtacagtatatccaaatcgtaatttggaataaatgttatgctaggatatcaactatga 18510441  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  18510442 aatttgtaaaagtacaaacttcagatagttgttg 18510475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 18522083 - 18522216
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || || | ||||||||||||||| | |  ||| |||||||||| ||||||  ||||||||| ||||     
T  18522083 acattgtaaatgagttacaatgatgttgactttcatattggtgtacagtatatccaaatcgtaatttggaataaatgttatgctaggatatcaactatga 18522182  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  18522183 aatttgtaaaagtacaaacttcagatagttgttg 18522216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 48773491 - 48773444
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  48773491 gactccacataaatcaaaataattaaatataacgactagggcgttaca 48773444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 10573377 - 10573255
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||| | ||||   |||| || |||  ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  10573377 acattgtaaatgagttacgatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatattatgctaggatatcaactatga 10573278  T
Q  183 aagttgtaaaagtacaagtttca 205  Q
    || ||||||||||||||| ||||    
T  10573277 aatttgtaaaagtacaagcttca 10573255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 13248028 - 13248161
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||| |||||||||||||||||    ||| |||| ||||| ||||||  ||||||||| ||||     
T  13248028 acattgtaaatgagttacaataatgttgactttcatatcggtgtacagtatatccagattgtaatttggagtaaatgttatgctaggatatcaactatga 13248127  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  13248128 aatttgtaaaagtacaagcttcaaatagttgttg 13248161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 15351768 - 15351648
Alignment:
Q  85 attgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaa 184  Q
    |||||||| ||||||||| ||||   |||| || |||  |||| |||||||||||| |  ||| |||||||||| ||||||  ||||||||| |||| ||    
T  15351768 attgtaaatgagttacaatgatgttgactttcatatcagtgtatagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatgaaa 15351669  T
Q  185 gttgtaaaagtacaagtttca 205  Q
     ||||||||||||||| ||||    
T  15351668 tttgtaaaagtacaagcttca 15351648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 38744196 - 38744243
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  38744196 actccacataaatcaaaataattaaatataacaactagggcgttacac 38744243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 9770748 - 9770701
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||| ||||||||||||||| |  ||||||||||||    
T  9770748 actccacataaatcaacataattaaatataacaactagggcgttacac 9770701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 12270176 - 12270130
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||| ||||||||||||||||||||| |  |||||||||||    
T  12270176 actccacatatatcaaaataattaaatataacaactagggcgttaca 12270130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 30099188 - 30099142
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||| |||||||||||||||||||| |  |||||||||||    
T  30099188 actccacataattcaaaataattaaatataaccactagggcgttaca 30099142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 12750246 - 12750379
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||| || ||||  ||||| || |||| ||||||||||||||||| || ||| |||||||||| ||||||  ||||||||| ||||     
T  12750246 acattgtaaatgagttataatgatgttaactttcatatcggtgtacagtatatccagatcataatttggaataaatgttatgctaggatatcaactatga 12750345  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  12750346 aatttgtaaaagtacaaacttcagatagttgttg 12750379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 15151864 - 15151997
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    ||||||| || ||||||||| ||||   |||| || |||| ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  15151864 acattgttaatgagttacaatgatgttgactttcatatcggtgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 15151963  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  15151964 aatttgtaaaagtacaaacttcagatagttgttg 15151997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 11536807 - 11536715
Alignment:
Q  124 tgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttcagagagttgttg 216  Q
    ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| |||| || ||||||||||||||| |||| | ||||||||    
T  11536807 tgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatgaaatttgtaaaagtacaagcttcaaatagttgttg 11536715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 13962879 - 13962833
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttacacat 86  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  13962879 ccacataaatcaaaataattaaatataacaattagggcgttacacat 13962833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 29327239 - 29327336
Alignment:
Q  119 atcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttcagagagttgttg 216  Q
    |||| ||||||||||||||| | |  ||| |||||||||| ||||||  ||||||||| |||| || ||||||||||||||| |||| | ||||||||    
T  29327239 atcggtgtacagtatatccatatcgtaatttggaataaatgttatgctaggatatcaactatgaaatttgtaaaagtacaagcttcaaatagttgttg 29327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 20018552 - 20018505
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||    
T  20018552 gactccacataaatcaaaataattaaatatgacgactagggcgttaca 20018505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 3329133 - 3329172
Alignment:
Q  44 ataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  3329133 ataaatcaaaataattaaaaataacgattagggcgttaca 3329172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 15632713 - 15632755
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  15632713 ccacataaatcaaaataattaaatataacaat-agggcgttaca 15632755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 46175630 - 46175677
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||| ||||||||||||||||||| |||  |||||||||||    
T  46175630 gactccacatagatcaaaataattaaatatatcgactagggcgttaca 46175677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 2387454 - 2387406
Alignment:
Q  36 gactccacataaatcaaaataa-ttaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||| ||||||||||| |  |||||||||||    
T  2387454 gactccacataaatcaaaataatttaaatataacaactagggcgttaca 2387406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 25159727 - 25159759
Alignment:
Q  36 gactccacataaatcaaaataattaaatataac 68  Q
    |||||||||||||||||||||||||| ||||||    
T  25159727 gactccacataaatcaaaataattaattataac 25159759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 27566248 - 27566296
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacaca 85  Q
    |||||| ||| ||||||||||||||||||||| |  |||||||||||||    
T  27566248 actccagatacatcaaaataattaaatataacaactagggcgttacaca 27566296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 3107 - 2974
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  3107 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 3008  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  3007 aatttgtaaaagtacaagcttcaaatagttgttg 2974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 11998 - 11865
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  11998 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 11899  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  11898 aatttgtaaaagtacaagcttcaaatagttgttg 11865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 17685255 - 17685122
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    ||||||||||  |||||||| ||||   |||| || |||||||||||||||||||||| |  ||| |||||||||| ||||||  |||||| |  ||||     
T  17685255 acattgtaaataagttacaatgatgttgactttcatatcgatgtacagtatatccagatcgtaatttggaataaatgttatgctaggatataacctatga 17685156  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||||| ||||||||    
T  17685155 aatttgtaaaagtacaagcttcagatagttgttg 17685122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 27278137 - 27278270
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||| ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  27278137 acattgtaaatgagttacaataatgttgactttcatatcggtgtacagtatatccagatcttaatttggaataaatgttatgctaggatatcaactatga 27278236  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  27278237 aaattgtaaaagtacaaacttcagatagttgttg 27278270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 27296629 - 27296762
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||| ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  27296629 acattgtaaatgagttacaataatgttgactttcatatcggtgtacagtatatccagatcttaatttggaataaatgttatgctaggatatcaactatga 27296728  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  27296729 aaattgtaaaagtacaaacttcagatagttgttg 27296762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 27303028 - 27303161
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||| ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  27303028 acattgtaaatgagttacaataatgttgactttcatatcggtgtacagtatatccagatcttaatttggaataaatgttatgctaggatatcaactatga 27303127  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  27303128 aaattgtaaaagtacaaacttcagatagttgttg 27303161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 29315270 - 29315387
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| | ||||||| ||||   |||| || |||| ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  29315270 acattgtaaatgggttacaatgatgttgactttcatatcggtgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 29315369  T
Q  183 aagttgtaaaagtacaag 200  Q
    || |||||||||||||||    
T  29315370 aatttgtaaaagtacaag 29315387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 93370 - 93321
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacaca 85  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  93370 gactccacataaatcaaaataattaaatatatcgactagggcgttacaca 93321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 27382038 - 27381905
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  |||||| |||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  27382038 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacaatatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 27381939  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || || |||||||||||| |||| | ||||||||    
T  27381938 aatttataaaagtacaagcttcaaatagttgttg 27381905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 27472421 - 27472288
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  |||||| |||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  27472421 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacaatatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 27472322  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || || |||||||||||| |||| | ||||||||    
T  27472321 aatttataaaagtacaagcttcaaatagttgttg 27472288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 8068537 - 8068491
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||    
T  8068537 actccacataaatcaaaataattaaatataacaactagggcgttaca 8068491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 4107886 - 4107932
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||||  |  |||||||||||    
T  4107886 actccacataaatcaaaataattaaatataataactagggcgttaca 4107932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 5713368 - 5713501
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||  ||||| || |||| |||||||||||||||||    ||| |||||||||| ||||||  ||||||||| ||||     
T  5713368 acattgtaaatgagttacaataatgttaactttcatatcggtgtacagtatatccagattgtaatttggaataaatgttatgctaggatatcaactatga 5713467  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  5713468 aatttgtaaaagtacaagcttcaaatagttgttg 5713501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 10622119 - 10621986
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| |||||||||| ||||||  ||||||||| ||||     
T  10622119 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgttatgctaggatatcaactatga 10622020  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  10622019 aatttgtaaaagtacaagcttcaaatagttgttg 10621986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 19920206 - 19920073
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||| ||||||||||||||||| |  ||| || ||||||| ||||||  ||||||||| ||||     
T  19920206 acattgtaaatgagttacaatgatgttgactttcatatcggtgtacagtatatccagatcgtaatttgaaataaatgttatgctaggatatcaactatga 19920107  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||  |||||| ||||||||    
T  19920106 aatttgtaaaagtacaaacttcagatagttgttg 19920073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 18268489 - 18268622
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    ||||||||||  |||||||| ||||   |||| || ||||||||| |||||||||||| |  ||| |||||||||| ||||||  |||||| |  ||||     
T  18268489 acattgtaaataagttacaatgatgttgactttcatatcgatgtatagtatatccagatcgtaatttggaataaatgttatgctaggatataacctatga 18268588  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||||| ||||||||    
T  18268589 aatttgtaaaagtacaagcttcagatagttgttg 18268622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 13479853 - 13479805
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13479853 gactccacataaatcaaaataattaaatataacgactagggcgttacac 13479805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 13630098 - 13630146
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13630098 gactccacataaatcaaaataattaaatataacgactagggcgttacac 13630146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 26969888 - 26970021
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||| |||||||||||||||||    ||| |||||||||| ||||||  ||||||||| ||||     
T  26969888 acattgtaaatgagttacaataatgttgactttcatatcggtgtacagtatatccagattgtaatttggaataaatgttatgctaggatatcaactatga 26969987  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || || |||||||||||| |||| | ||||||||    
T  26969988 aatttataaaagtacaagcttcaaatagttgttg 26970021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 21397831 - 21397874
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  21397831 ccacataaatcaaaataattaaatataacaattagggcgttaca 21397874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 37622151 - 37622108
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  37622151 ccacataaatcaaaataattaaatataacaattagggcgttaca 37622108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 45141385 - 45141338
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||    
T  45141385 gactccacataaatcaaaataattaaatatgacgactagggcgttaca 45141338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 1585155 - 1585201
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttacacat 86  Q
    ||||||||||||||||||||||||||||| || |||| |||||||||    
T  1585155 ccacataaatcaaaataattaaatataacaattagggtgttacacat 1585201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 45958596 - 45958550
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  45958596 actccacataaatcaaaataattaaatatatcgactagggcgttaca 45958550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 54825013 - 54824966
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| | |||  |||||||||||    
T  54825013 gactccacataaatcaaaataattaaataaatcgactagggcgttaca 54824966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 11207838 - 11207800
Alignment:
Q  45 taaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  11207838 taaatcaaaataattaaatataacgactagggcgttaca 11207800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 35461233 - 35461195
Alignment:
Q  45 taaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  35461233 taaatcaaaataattaaatataacgactagggcgttaca 35461195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 39265053 - 39265007
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||| |||||||||||||||||| |  |||||||||||    
T  39265053 actccacataaattaaaataattaaatataacaactagggcgttaca 39265007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 11170083 - 11170036
Alignment:
Q  36 gactccacataaatc-aaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  11170083 gactccacataaatccaaaataattaaa-ataacgattagggcgttaca 11170036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 110885 - 110768
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||||||||||||| ||| |  |||| || ||||| ||| |||||||| ||| || ||| || ||||||| |||||| |||| ||||| ||||     
T  110885 acattgtaaaggagttacaatgataatgactttcatatcgaagtatagtatatctagatcacaatttgcaataaatgttatgcttggacatcaactatga 110786  T
Q  183 aagttgtaaaagtacaag 200  Q
    || |||||||||||||||    
T  110785 aatttgtaaaagtacaag 110768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 22170909 - 22171042
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| |||||||||| || |||  ||||||||| ||||     
T  22170909 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgttctgctaggatatcaactatga 22171008  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||| | ||||||||    
T  22171009 aatttgtaaaagtacaagcttcaaatagttgttg 22171042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 28554304 - 28554437
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||| ||||||||||||| |||    ||| |||||||||| ||||||  ||||||||| ||||     
T  28554304 acattgtaaatgagttacaatgatgttgactttcatatcggtgtacagtatatcaagattgtaatttggaataaatgttatgctaggatatcaactatga 28554403  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || |||||||| |||||| |||||| ||||||||    
T  28554404 aatttgtaaaaatacaagcttcagatagttgttg 28554437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 24642066 - 24642199
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||||||||||||| ||||   |||| || ||||  |||||||||||||| | |  ||| | |||||||| |||||| |||| || || ||||     
T  24642066 acattgtaaaggagttacaatgatgttgactttcatatcgtagtacagtatatccaaatcgcaatttagaataaatgttatgcttggacatgaactatga 24642165  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || | ||||||||||||| |||| | ||||||||    
T  24642166 aattggtaaaagtacaagcttcaaatagttgttg 24642199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 16265673 - 16265641
Alignment:
Q  36 gactccacataaatcaaaataattaaatataac 68  Q
    |||||||||||||||||||||||||||||||||    
T  16265673 gactccacataaatcaaaataattaaatataac 16265641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 16289401 - 16289433
Alignment:
Q  36 gactccacataaatcaaaataattaaatataac 68  Q
    |||||||||||||||||||||||||||||||||    
T  16289401 gactccacataaatcaaaataattaaatataac 16289433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 19297814 - 19297861
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| | |||  |||||||||||    
T  19297814 gactccacataaatcaaaataattaaataaatcgactagggcgttaca 19297861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 23118498 - 23118541
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||| |||||||||||||||| || |||||||||||    
T  23118498 ccacataaatcagaataattaaatataacaattagggcgttaca 23118541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 3699067 - 3699113
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||| ||||||||||||||||||||| |  |||||||||||    
T  3699067 actccacatacatcaaaataattaaatataacaactagggcgttaca 3699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 10947424 - 10947378
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||    
T  10947424 actccacataaatcaaaataattaaataaaacaactagggcgttaca 10947378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 10955506 - 10955460
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||    
T  10955506 actccacataaatcaaaataattaaataaaacaactagggcgttaca 10955460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 6589358 - 6589405
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||||| ||||||||||| || || ||||||||||||    
T  6589358 gactccacataaatcaaa-taattaaatatgacaattagggcgttacac 6589405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 7002916 - 7002868
Alignment:
Q  36 gactccacataaatcaaaataa-ttaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||| ||||||||||| |  |||||||||||    
T  7002916 gactccacataaatcaaaataatttaaatataacaactagggcgttaca 7002868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 14745280 - 14745232
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacaca 85  Q
    ||||||||| | |||||||||||||||||||| |  |||||||||||||    
T  14745280 actccacattactcaaaataattaaatataacaactagggcgttacaca 14745232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 19708005 - 19707872
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || |||| ||||||||||||||| |    ||| |||||||||| |||||   ||||||||| ||||     
T  19708005 acattgtaaatgagttacaatgatgttgactttcatatcggtgtacagtatatccaaattgtaatttggaataaatgttatgttaggatatcaactatga 19707906  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||||| ||||||||    
T  19707905 aatttgtaaaagtacaagcttcagatagttgttg 19707872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 24696277 - 24696143
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaatt-ttatgcatggatatcaattatg 181  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| ||||||||||  ||||||  |||||| || ||||    
T  24696277 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgattatgctaggatattaactatg 24696178  T
Q  182 taagttgtaaaagtacaagtttcagagagttgttg 216  Q
     || ||||||||||||||| |||| | ||||||||    
T  24696177 aaatttgtaaaagtacaagcttcaaatagttgttg 24696143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 29745463 - 29745431
Alignment:
Q  36 gactccacataaatcaaaataattaaatataac 68  Q
    |||||||||||||||||||||||||||||||||    
T  29745463 gactccacataaatcaaaataattaaatataac 29745431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 19509427 - 19509473
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||| |||||||||||||| |  |||||||||||    
T  19509427 actccacataaatcaaattaattaaatataacaactagggcgttaca 19509473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 35531 - 35663
Alignment:
Q  84 cattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgta 183  Q
    |||||||||||| |||||| |||||  ||||    ||| || ||||||||||||||| |  |||||| |||||||  ||||  |||||||||| ||||||    
T  35531 cattgtaaaggaattacaaagatgaatacttatgtatccatatacagtatatccagatcgcaatctgaaataaatagtatgtttggatatcaactatgta 35630  T
Q  184 agttgtaaaagtacaagtttcagagagttgttg 216  Q
    ||||||||||| ||||| |||| | ||||||||    
T  35631 agttgtaaaagaacaagcttcatatagttgttg 35663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 35099 - 35180
Alignment:
Q  124 tgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttca 205  Q
    |||| |||||||||||| |  | ||||||||||||  ||||  |||||||||| ||||||||||||||||||||||| ||||    
T  35099 tgtatagtatatccagatcgcagtctggaataaatggtatgtttggatatcaactatgtaagttgtaaaagtacaagattca 35180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22658008 - 22657876
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    ||||| |||||||||||||| ||||   |||| || || | | ||||||||||||||| |  ||| |||||||||| |||||| |||| ||||| ||||     
T  22658008 acattttaaaggagttacaatgatgttgactttcatatgggtatacagtatatccagatcgcaatttggaataaatgttatgcttggacatcaactatga 22657909  T
Q  183 aagttgtaaaagtacaagtttcagagagttgtt 215  Q
    || ||||||||||||||| || ||| |||||||    
T  22657908 aatttgtaaaagtacaagatttagatagttgtt 22657876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 3854593 - 3854460
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| ||||||||| ||||   |||| || || ||||||||||||||||| |    ||| |||||||||| ||||||  ||||||||| ||||     
T  3854593 acattgtaaatgagttacaatgatgttgactttcatattgatgtacagtatatccatattgtaatttggaataaatgttatgctaggatatcaactatga 3854494  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || || |||||||||||| |||| | ||||||||    
T  3854493 aatttataaaagtacaagcttcatatagttgttg 3854460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 27278531 - 27278398
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||||||||||||| ||||   |||| ||  ||| |||| |||||||||||| |  ||| | ||||| || |||||| |||||||||| ||||     
T  27278531 acattgtaaaggagttacaatgatgttgactttcatttcggtgtatagtatatccagatcgcaatttagaatagatgttatgcttggatatcaactatga 27278432  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || || |||||||||||| |||| | ||||||||    
T  27278431 aatttttaaaagtacaagcttcacatagttgttg 27278398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 4232480 - 4232527
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||    
T  4232480 gactccacataaatcaaaataattaaatatatcgactagggcgttaca 4232527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 17150641 - 17150684
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  17150641 ccacataaatcaaaataattaaatataacaattagggcgttaca 17150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 20572085 - 20572132
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  20572085 actccacataaatcaaaataattaaatataacaactagggcgttacac 20572132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 24851472 - 24851519
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||    
T  24851472 gactccacataaatcaaaataattaaatataacgactagggtgttaca 24851519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 20294087 - 20294133
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||    
T  20294087 actccacataaatcaaaataattaaatataacaactagggcgttaca 20294133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 21964318 - 21964366
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacac 84  Q
    ||||||||||||||||||||||||||||| | |||  ||||||||||||    
T  21964318 gactccacataaatcaaaataattaaataaatcgactagggcgttacac 21964366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 9292972 - 9293019
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||||||    
T  9292972 gactccacataaatcaaaataattaaatatatcgactagggtgttaca 9293019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 20075746 - 20075715
Alignment:
Q  37 actccacataaatcaaaataattaaatataac 68  Q
    ||||||||||||||||||||||||||||||||    
T  20075746 actccacataaatcaaaataattaaatataac 20075715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 20300606 - 20300637
Alignment:
Q  37 actccacataaatcaaaataattaaatataac 68  Q
    ||||||||||||||||||||||||||||||||    
T  20300606 actccacataaatcaaaataattaaatataac 20300637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 9473856 - 9473904
Alignment:
Q  88 gtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatc 136  Q
    |||||| ||||||||||||||| ||||||| |||| |||||| ||||||    
T  9473856 gtaaagaagttacaaggatgacgacttccatatcggtgtacaatatatc 9473904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 4948 - 5081
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgt 182  Q
    |||||||||| |||||||||  |||   |||| || |||  ||||||||||||||||| |  ||| ||||||||||  ||||   ||||||||| ||||     
T  4948 acattgtaaatgagttacaaaaatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaataaatgctatgttaggatatcaactatga 5047  T
Q  183 aagttgtaaaagtacaagtttcagagagttgttg 216  Q
    || ||||||||||||||| |||||| ||||||||    
T  5048 aatttgtaaaagtacaagcttcagatagttgttg 5081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 27273436 - 27273485
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacaca 85  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  27273436 gactccacataaatcaaaataattaaatatatcgactagggcgttacaca 27273485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 35410 - 35453
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  35410 ccacataaatcaaaataattaaatataacaattagggcgttaca 35453  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11467324 - 11467370
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  11467324 actccacataaatcaaaataattaaatatatcgactagggcgttaca 11467370  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 24425683 - 24425633
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttacacat 86  Q
    |||||||||||||||||||||||||| |||||| |  ||||| ||||||||    
T  24425683 gactccacataaatcaaaataattaattataacaactagggcattacacat 24425633  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 27038536 - 27038568
Alignment:
Q  36 gactccacataaatcaaaataattaaatataac 68  Q
    |||||||||||||||||||||||||| ||||||    
T  27038536 gactccacataaatcaaaataattaattataac 27038568  T

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Target: scaffold0433 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 6569 - 6661
Alignment:
Q  124 tgtacagtatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttcagagagttgttg 216  Q
    ||||||||||||||||| |  ||| |||||||||| |||| |  ||||||||| |||| || ||||||||||||||| |||| | ||||||||    
T  6569 tgtacagtatatccagatcgtaatttggaataaatgttatactaggatatcaactatgaaatttgtaaaagtacaagcttcaaatagttgttg 6661  T

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Target: scaffold0555 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 470 - 517
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||    
T  470 gactccacataaatcaaaataattaaatataacaactagggcgttaca 517  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 511453 - 511419
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacga 70  Q
    |||||||||||||||||||||||||||||||||||    
T  511453 gactccacataaatcaaaataattaaatataacga 511419  T

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Target: scaffold0499 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 150 - 193
Alignment:
Q  40 ccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||||||||||||||||| || |||| ||||||    
T  150 ccacataaatcaaaataattaaatataacaattagggtgttaca 193  T

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Target: scaffold0320 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 2282 - 2329
Alignment:
Q  36 gactccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||||| || |  |||||||||||    
T  2282 gactccacataaatcaaaataattaaatatgacaactagggcgttaca 2329  T

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Target: scaffold0466 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 12521 - 12567
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttaca 83  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||    
T  12521 actccacataaatcaaaataattaaataaaacaactagggcgttaca 12567  T

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Target: scaffold0203 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 24314 - 24180
Alignment:
Q  83 acattgtaaaggagttacaaggatgacaacttccacatcgatgtacagtatatccagaccaaaatctggaataaatt-ttatgcatggatatcaattatg 181  Q
    |||||||||| ||||||||| ||||   |||| || |||  ||||||||||||||||| |  ||| ||||||| ||  ||||||  |||||| || ||||    
T  24314 acattgtaaatgagttacaatgatgttgactttcatatcagtgtacagtatatccagatcgtaatttggaatatatgattatgctaggatattaactatg 24215  T
Q  182 taagttgtaaaagtacaagtttcagagagttgttg 216  Q
     || ||||||||||||||| |||| | ||||||||    
T  24214 aaatttgtaaaagtacaagcttcaaatagttgttg 24180  T

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Target: scaffold0390 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 7672 - 7587
Alignment:
Q  131 tatatccagaccaaaatctggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttcagagagttgttg 216  Q
    |||||||||| |  ||| |||||||||| || |||  ||||||||| |||| || ||||||||||||||| |||| | ||||||||    
T  7672 tatatccagatcgtaatttggaataaatgttctgctaggatatcaactatgaaatttgtaaaagtacaagcttcaaatagttgttg 7587  T

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Target: scaffold0705 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 508 - 452
Alignment:
Q  149 tggaataaattttatgcatggatatcaattatgtaagttgtaaaagtacaagtttca 205  Q
    |||||||||| ||||||  ||||||||| |||| || ||||||||||||||| ||||    
T  508 tggaataaatgttatgctaggatatcaactatgaaatttgtaaaagtacaagcttca 452  T

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Target: scaffold0101 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 5632 - 5585
Alignment:
Q  36 gactccacataaatc-aaaataattaaatataacgatcagggcgttaca 83  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  5632 gactccacataaatccaaaataattaaa-ataacgattagggcgttaca 5585  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 65915 - 65967
Alignment:
Q  37 actccacataaatcaaaataattaaatataacgatcagggcgttacacattgt 89  Q
    ||||||||||||| ||||||||||| |||||| |  |||||||||||| ||||    
T  65915 actccacataaattaaaataattaactataacaactagggcgttacactttgt 65967  T

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