View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_38 (Length: 301)
Name: NF3879_low_38
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 34596273 - 34596564
Alignment:
| Q |
1 |
tagtgggctattttatagcttttgagtttccagttgttttgactatttaatagtctatgttttatcaataaagcagcagttttgagtttcatattccata |
100 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34596273 |
tagtgggccattttatagcttttcagtttctagttgttttgactatttaatagtctatattttatcaataaagcagcagttttgagtttcatattccata |
34596372 |
T |
|
| Q |
101 |
tctctacaaactggtatcaaagcccccactgggcctgataaaaatatctaagccgcagcttagctaagaaaaagagagaaacacaaaaatgagtgacaca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34596373 |
tctctacaaactggtatcagagcccccactgggcctgataaaaataactaagccgtagcttagctaagaaaaagagagaaacacaaaaatgagtgacaca |
34596472 |
T |
|
| Q |
201 |
aagctttcagcaaaaattcctcattttgatggtcttc-ctatgatcattggagtgagttgatggagaatcttcttcgtgccaaaggtctctg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34596473 |
aagctttcagcaaaaattcctcattttgatggtcttcactatgatcattggagtgagttgatggagaatcttcttcgtgccaaaggtctctg |
34596564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34600550 - 34600659
Alignment:
| Q |
1 |
tagtgggctattttatagcttttgagtttccagttgttttgactatttaatagtctatgttttatcaataaagcagcagttttgagtttcatattccata |
100 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
34600550 |
tagtgggccattttatagcttttcagtttctagttgttttgactatttaatagtctatattttatcaataaagcagcagttttgagttttatattccata |
34600649 |
T |
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| Q |
101 |
tctctacaaa |
110 |
Q |
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|||||||||| |
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| T |
34600650 |
tctctacaaa |
34600659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 1185101 - 1185390
Alignment:
| Q |
1 |
tagtgggctattttatagcttttgagtttccagttgttttgactatttaatagtctatgttttatcaataaagcagcagttttgagtttc----atattc |
96 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| ||||||||||| || ||| ||||| | |||||||| ||||| |||||| |
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| T |
1185101 |
tagtgggctattttatagcttttcttgttgtagttgttttgactacttaatagtctaatttctatgaataa-gtagcagtttc-agtttttaagatattc |
1185198 |
T |
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| Q |
97 |
catatctctacaaactggtatcaaagcccccactgggcctgataaaaatatctaagccgcagcttagctaagaaaaagagagaaacacaaaaatgagtga |
196 |
Q |
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||||||||||||||| |||||| |||||||| ||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
1185199 |
tatatctctacaaactagtatcagagcccccatagggcctgataaaa-taactaagccgtagcttagctaagaaacagagagaaacacaaaaatgagtga |
1185297 |
T |
|
| Q |
197 |
cacaaagctttcagcaaaaattcctcattttgatggtcttc-ctatgatcattggagtgagttgatggagaatcttcttcgtgccaaaggtct |
288 |
Q |
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||||||| ||| ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1185298 |
cacaaagtttttagcaaaaattcctcattttgatggtctccactacgatcattggaatgagttgatggagaatcttcttcgtgccaaaggtct |
1185390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36479645 - 36479563
Alignment:
| Q |
1 |
tagtgggctattttatagcttttga-gtttccagttgttttgactatttaatagtctatgttttatcaataaagcagcagttt |
82 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||||| |
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| T |
36479645 |
tagtgggctattttatagcttttcttgtttctagttgttttgactatttaatagtctaagttctatgaataaaggagcagttt |
36479563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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