View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_39 (Length: 299)
Name: NF3879_low_39
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 34466450 - 34466715
Alignment:
| Q |
23 |
cggtggtggtttctcaagatggtaatggtgatgttagtgttgagaatgaagaaaatttgaagccaaagttgaaggctttgcattgggataaagttaaggc |
122 |
Q |
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| T |
34466450 |
cggtggtggtttctcaagatggtaatggtgatgttagtgttgagaatgaagaaaatttaaagccaaagttgaaggctttgcattgggataaagttaaggc |
34466549 |
T |
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| Q |
123 |
tagctcagatagggccatggtttgggatcaactgagaccaagttcttttcagtaagacacacttatgacttaactaacatcattaacatttgactttgtc |
222 |
Q |
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| T |
34466550 |
tagctcagatagggccatggtttgggatcaactgagaccaagttcttttcagtaagacacacttatgacttaactaacatcattaacatttgactttgtc |
34466649 |
T |
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| Q |
223 |
ttagaaacaaaaaacttgtcattatcatagtatctttgttttattctattttatgtgaatgatgat |
288 |
Q |
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| T |
34466650 |
ttagaaacaaaaaacttgtcattatcatagtatctttgttttattctattttatgtgaatgttgat |
34466715 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 10326188 - 10326121
Alignment:
| Q |
85 |
ccaaagttgaaggctttgcattgggataaagttaaggctagctcagatagggccatggtttgggatca |
152 |
Q |
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| T |
10326188 |
ccaaagttgaagcctttgcattgggataaagtgagggctagttccgatcgtgaaatggtttgggatca |
10326121 |
T |
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