View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_4 (Length: 555)
Name: NF3879_low_4
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 29926900 - 29927260
Alignment:
| Q |
13 |
aatatgaatcaaataataagttgttggggtgcaataataaccatagtgtggatgagtgtgacagtgacattatcaaagggtgtt---cgtcctatggttc |
109 |
Q |
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| T |
29926900 |
aatatgaatcaaataataagttgttggggtgcactaataaccatagtgtggatgagtgtgacagtgacattatcaaagggtgttgttcgtcctatggttc |
29926999 |
T |
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| Q |
110 |
ataaacatgacgagcaaggtaattttgatgtagtagggaaaaaatgggctttacaggttgctggttcaaaaggttactccaattataggcaccaatctaa |
209 |
Q |
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| T |
29927000 |
ataaacatgacgagcaaggtaattttgaagtagtagggaaaaaatgggctttactggttgctggttcaaaaggttactccaattataggcaccaatctaa |
29927099 |
T |
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| Q |
210 |
tatttgtcatgcctaccatatattaaaaagtggtggtcttcaagatgaaaacataattgttttcatgtatgatgatattgcctaccataaagaaaatcca |
309 |
Q |
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| T |
29927100 |
tatttgtcatgcctaccatatattaaaaagtggtggtcttcaagatgaaaacataattgttttcatgtatgatgatattgcctaccataatgaaaatcca |
29927199 |
T |
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| Q |
310 |
agacctggtgttataatcaatagaccggatggtcctaatgtttatcctggtgttcctaagg |
370 |
Q |
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| T |
29927200 |
agacctggtgttataatcaatagaccggatggtcctaatgtttatcctggtgttcctaagg |
29927260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 28257603 - 28257959
Alignment:
| Q |
14 |
atatgaatcaaataataagttgttggggtgcaataataaccatagtgtggatgagtgtgacagtgacattatcaaagggtgttcgtcctatggttcataa |
113 |
Q |
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| T |
28257603 |
atatgaatcaaataacaagttattgggctacactcataaccatagtgtggatgagtgtgacagtgacattatcaaagggtattcgacctatggttgatga |
28257702 |
T |
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| Q |
114 |
acatgacgagcaaggtaattttgatgtagtagggaaaaaatgggctttacaggttgctggttcaaaaggttactccaattataggcaccaatctaatatt |
213 |
Q |
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| T |
28257703 |
acataatgagcaaggtaattttgaagtagtaaggaaaaaatgggcattactagttgctggttcaaaagattacccaaattataggcaccaagccaatatt |
28257802 |
T |
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| Q |
214 |
tgtcatgcctaccatatattaaaaagtggtggtcttcaagatgaaaacataattgttttcatgtatgatgatattgcctaccataaagaaaatccaagac |
313 |
Q |
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| T |
28257803 |
tgtcatgcctaccatgtattaaaaaatggtggccttcaagatgaaaacataattgttttcatgtatgatgatattgcctaccataaagaaaatccaaggc |
28257902 |
T |
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| Q |
314 |
ctggtgttataatcaatagaccggatggtcctaatgtttatcctggtgttcctaagg |
370 |
Q |
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| T |
28257903 |
aaggtgttataatcaataggccagatggtcctaatgtttatcctggtgttcctaagg |
28257959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 439 - 539
Target Start/End: Original strand, 29927329 - 29927429
Alignment:
| Q |
439 |
caatttagtggtatagtttactttgaaatttatattccactacaaaaagttagtgttcaatagagtgaaaatgaaaatatttcatttttctatgtttttt |
538 |
Q |
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| T |
29927329 |
caatttagtggtatagtttactttgaaatttatattccactacaaaaagttagtgttcaatagagtgaaaatgaaaatatttcatttttctatgtttttt |
29927428 |
T |
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| Q |
539 |
a |
539 |
Q |
| |
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| T |
29927429 |
a |
29927429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 11323389 - 11323492
Alignment:
| Q |
190 |
aattataggcaccaatctaatatttgtcatgcctaccatatattaaaaagtggtggtcttcaagatgaaaacataattgttttcatgtatgatgatattg |
289 |
Q |
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||||||||||||||| | ||||||| |||||||| || |||||||||| || |||||| ||||||||||||| ||||||||||||| ||||| |||| |
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| T |
11323389 |
aattataggcaccaagccgatatttgccatgcctatcaaatattaaaaaaaggcggtcttaaagatgaaaacatcgttgttttcatgtacgatgacattg |
11323488 |
T |
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| Q |
290 |
ccta |
293 |
Q |
| |
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|||| |
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| T |
11323489 |
ccta |
11323492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 4493556 - 4493595
Alignment:
| Q |
251 |
aagatgaaaacataattgttttcatgtatgatgatattgc |
290 |
Q |
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| T |
4493556 |
aagaagaaaacattattgttttcatgtatgatgatattgc |
4493595 |
T |
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