View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_43 (Length: 286)
Name: NF3879_low_43
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 11460366 - 11460536
Alignment:
| Q |
15 |
ttgatcatcattagtgaattgggcattgaagtttattgatataccatcagtgaggcagtgatcatgattggtatggttcttgaggttcgtgtagaaaaca |
114 |
Q |
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| T |
11460366 |
ttgatcatcatcagtgaattgggcgttgaagtttattgatataccatcggtgaggcagtgatcatggttggagtggttcttgaggtttgtgtagaaaaca |
11460465 |
T |
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| Q |
115 |
tcaaaaccatattgggctcttccaatggtgctgaaaactatggttcctattggtgaaaccattgtagttaa |
185 |
Q |
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| T |
11460466 |
tcaaaaccatattgggctcttccaatggtgctgaaaacgatggttcctattggtgaagacattgtagttaa |
11460536 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 11460542 - 11460599
Alignment:
| Q |
217 |
ttggtggtaatgtgttagggcaatgagtgtttaaaaaggtgatgctcttgttctgcct |
274 |
Q |
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| T |
11460542 |
ttggtggtaatgtgttgtggcaatgagtgtttaaaaaggtgatgctcttgttctgcct |
11460599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 11321836 - 11321904
Alignment:
| Q |
94 |
ttgaggttcgtgtagaaaacatcaaaaccatattgggctcttccaatggtgctgaaaactatggttcct |
162 |
Q |
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| T |
11321836 |
ttgaggtgtgtgtagaaaacatcgaaaccgtattgggttcttcctacggtgttgaaaacgatggttcct |
11321904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 11479857 - 11479925
Alignment:
| Q |
94 |
ttgaggttcgtgtagaaaacatcaaaaccatattgggctcttccaatggtgctgaaaactatggttcct |
162 |
Q |
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| T |
11479857 |
ttgaggtgtgtgtagaaaacatcgaaaccgtattgggttcttcctacggtgttgaaaacgatggttcct |
11479925 |
T |
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