View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_45 (Length: 276)
Name: NF3879_low_45
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 1695909 - 1695994
Alignment:
| Q |
181 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcattaaaatagaataa |
266 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcatgaaaatagaataa |
1695994 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 1685404 - 1685462
Alignment:
| Q |
208 |
atcgttgatctaaatatagctggtatactaaggttgattctttcattaaaatagaataa |
266 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttcgttaaaatagaataa |
1685462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 1685271 - 1685389
Alignment:
| Q |
25 |
gtaagtgtatgtttttgaagcttatctttaataaaatcataatgagtttgatgaaatcac--------ggttattttattttgttgaaacttctaaaaat |
116 |
Q |
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| T |
1685271 |
gtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcactgtgacattgttatttaattttattgaaacttctaaaaat |
1685370 |
T |
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| Q |
117 |
caattttacccaaattaga |
135 |
Q |
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| T |
1685371 |
cagtttttccgaaattaga |
1685389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 1695817 - 1695884
Alignment:
| Q |
100 |
ttgaaacttctaaaaatcaattttacccaaattagagtgatataaactatgagggctgtcctcttttttg |
169 |
Q |
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| T |
1695817 |
ttgaaacttctaaaaatcagttttacccaaattagagtg--ataaactatgagctttgccctcttttttg |
1695884 |
T |
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