View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_46 (Length: 271)
Name: NF3879_low_46
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1696132 - 1696392
Alignment:
| Q |
1 |
ctggtgagaagaacagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagc |
100 |
Q |
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| T |
1696132 |
ctggtgagaagaacagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagc |
1696231 |
T |
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| Q |
101 |
taaaatcaatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaa |
200 |
Q |
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| T |
1696232 |
taaaatcaatcgtaactgaactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataa |
1696331 |
T |
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| Q |
201 |
aaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
261 |
Q |
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| T |
1696332 |
aaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1685583 - 1685835
Alignment:
| Q |
1 |
ctggtgagaagaacagtccaaacgagataacattccctgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaa |
97 |
Q |
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| T |
1685583 |
ctggtgcgaagaacagtccaaacgagataacattcccttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaa |
1685682 |
T |
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| Q |
98 |
agctaaaatcaatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatga |
197 |
Q |
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| T |
1685683 |
agctaaaatcaatcgtaactgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatga |
1685782 |
T |
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| Q |
198 |
gaaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
261 |
Q |
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| T |
1685783 |
taaaaagttaaaataa-----------actgaaaagagaagaagaagtgattaacaaacctatg |
1685835 |
T |
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