View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_52 (Length: 257)
Name: NF3879_low_52
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55956491 - 55956730
Alignment:
| Q |
1 |
gtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgat |
100 |
Q |
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| T |
55956491 |
gtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgat |
55956590 |
T |
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| Q |
101 |
tttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacattgaaattggc |
200 |
Q |
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| T |
55956591 |
tttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacagtgaaattggc |
55956690 |
T |
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| Q |
201 |
acttatgaccttgagactgatctatgtctatgtcttctct |
240 |
Q |
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| T |
55956691 |
acttatgaccttgagactgatctatgtccaagtcttctct |
55956730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 55960004 - 55960056
Alignment:
| Q |
135 |
aagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcata |
187 |
Q |
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| T |
55960004 |
aagaagatgaatgaggaaatgatgagtaaggaagatttcaattccatggcata |
55960056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 12426821 - 12426995
Alignment:
| Q |
1 |
gtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgat |
100 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| |||||| |
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| T |
12426821 |
gtggaagttttcctgctaatgctagttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcattttgat |
12426914 |
T |
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| Q |
101 |
tttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
181 |
Q |
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||||||||| || || |||| || |||| | |||||||||||||||||||| || | ||||||| ||||| ||||||| |
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| T |
12426915 |
tttctgcttgtagatttttgctaggaaaagcagaaagaagatgaatgaggaaattatcaagaaggaagatttggattccat |
12426995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 12265974 - 12265825
Alignment:
| Q |
26 |
ttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgattttctgcttataaatctttgttaaa |
125 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| || ||||||| || |
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| T |
12265974 |
ttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcactttgattttatgcttgtagatctttgctagg |
12265881 |
T |
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| Q |
126 |
caaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
181 |
Q |
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||| || |||||||||||| |||||||| | || ||||| | |||||| |||||| |
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| T |
12265880 |
aaaattagcaagaagatgaaggaggaaattaggaagaagggagatttgagttccat |
12265825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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