View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_57 (Length: 251)
Name: NF3879_low_57
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_57 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 47843 - 47615
Alignment:
| Q |
18 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47843 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaat |
47744 |
T |
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| Q |
118 |
aacattgttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47743 |
aacagagttagaaaggtaccacctgacacgatatcatgacttctgtgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
47644 |
T |
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| Q |
218 |
gcgaagtttggaatattgcctttgcttct |
246 |
Q |
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|||||||| ||||||||||||| |||||| |
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| T |
47643 |
gcgaagttcggaatattgccttagcttct |
47615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 20134023 - 20134251
Alignment:
| Q |
18 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
20134023 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacggagaat |
20134122 |
T |
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| Q |
118 |
aacattgttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
217 |
Q |
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| T |
20134123 |
aacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
20134222 |
T |
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| Q |
218 |
gcgaagtttggaatattgcctttgcttct |
246 |
Q |
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| T |
20134223 |
gcgaagttcggaatattgccttggcttct |
20134251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 44358048 - 44357820
Alignment:
| Q |
18 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
44358048 |
tctatcacagtgcatatatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccaattcggtttaacaaaaggatccacggagaat |
44357949 |
T |
|
| Q |
118 |
aacattgttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44357948 |
aacagagttagaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttg |
44357849 |
T |
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| Q |
218 |
gcgaagtttggaatattgcctttgcttct |
246 |
Q |
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|||||||| ||||||||||||| |||||| |
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| T |
44357848 |
gcgaagttcggaatattgccttggcttct |
44357820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 12325643 - 12325444
Alignment:
| Q |
33 |
atatcgcataaacgacgaacaaaaagtattgtaatagcagaaaaccaaagtccgattcggtttaacaaaaggatcaacggagaataacattgttagaaag |
132 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12325643 |
atatcgcacaaacgacgaacaaaaagtattgtaat----gaaaactaatggccgactcggtttaacaaaaggatcaacggagaataacagagttagaaag |
12325548 |
T |
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| Q |
133 |
gtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagtttggaata |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||| |
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| T |
12325547 |
gtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggctgcctatcttcctcg---gcggtgttggcgaagttcggaata |
12325451 |
T |
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