View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_58 (Length: 250)
Name: NF3879_low_58
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 44708946 - 44708728
Alignment:
| Q |
14 |
agactatacaacctaaggccacgtattgggtatgagtaagagagaatctaaaatgtgttgccagctatgaatttgaaggatgaaagctttttctcagggt |
113 |
Q |
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| T |
44708946 |
agactatacaacctaaggccacgtattgggtatgagtaagagagaatctaaaatgtgttgccagctatgaatttgaaggatgaaagctttttctcagggt |
44708847 |
T |
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| Q |
114 |
caaagctgtcatattttctttcaaacccnnnnnnnnnnnnnnnnaattaacctacgtctctctattattttcattgtatttttattatgacatgaaaatc |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708846 |
caaagctgtcatattttctttcaaaccc--ttttttttttttttaattaacctacgtctctctattattttcattgtatttttattatgacatgaaaatc |
44708749 |
T |
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| Q |
214 |
catatactagatactactact |
234 |
Q |
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||||||||| ||||||||||| |
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| T |
44708748 |
catatactaaatactactact |
44708728 |
T |
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