View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_59 (Length: 249)
Name: NF3879_low_59
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 49068789 - 49068840
Alignment:
| Q |
8 |
gagcagagactacaaaaattatgtcattttattatatccaaaaaattgaagatac |
62 |
Q |
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| T |
49068789 |
gagcagagactacaaaaattatgtcatt---ttatatccaaaaaattgaagatac |
49068840 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 49068949 - 49068992
Alignment:
| Q |
206 |
caattattcaacgatattatctctcatactgtggcatgtttgtt |
249 |
Q |
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| T |
49068949 |
caattattcaacaatattatctctcatactgtggcatatttgtt |
49068992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 37603924 - 37603880
Alignment:
| Q |
15 |
gactacaaaaattatgtcattttattatatccaaaaaattgaagatac |
62 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
37603924 |
gactacaaaaattatgtcatt---ttatatccaaaaaattgaatatac |
37603880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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