View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3879_low_6 (Length: 538)
Name: NF3879_low_6
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 33115009 - 33115514
Alignment:
| Q |
18 |
cattgtagatgcgataaacatacacacactaaaataatcataaggataaacatttaaaactaacacatatcagacaaattattgttagaagttactatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115009 |
cattgtagatgcgataaacatacacacactaaaataatcataaggataaacatttaaaactaacacatatcagacaaattattgttagaagttactatag |
33115108 |
T |
|
| Q |
118 |
atttaggattaaaggttgctagcagaatcaacaatagcatttattattcaaaagatgcaaatgttgagagctacatgtgtctctagagaacaacttaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115109 |
atttaggattaaaggttgctagcagaatcaacaatagcattcattattcaaaagatgcaaatgttgagagctacatgtgtctctagagaacaacttaagc |
33115208 |
T |
|
| Q |
218 |
acttgcagaaattcagtatgagtttgggattaattcagtatgtgaagttgctaataaaggaaatgaaatcccttagaaggtctcagtcgtcaaacaagtg |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115209 |
acttgcagaaattcggtatgagtttgggattaattcggtatgtgaagttgctaataaaggaagtgaaatcccttagaaggtctcagtcgtcaaacaagtg |
33115308 |
T |
|
| Q |
318 |
gtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactctgtcaataaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33115309 |
gtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactctatcaataaac |
33115408 |
T |
|
| Q |
418 |
tcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatccatatgttcaccagttcctatgaatatgaccg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115409 |
tcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatccatatgttcaccagttcctatgaatatgaccg |
33115508 |
T |
|
| Q |
518 |
aactct |
523 |
Q |
| |
|
|||||| |
|
|
| T |
33115509 |
aactct |
33115514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 307 - 515
Target Start/End: Original strand, 33167015 - 33167223
Alignment:
| Q |
307 |
tcaaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactc |
406 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| || ||| ||| | ||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33167015 |
tcaaaaaagttgtgcaacgatggaggaaaaaatgctagtgaaggtcggcggatttttctttctggcaagttttgaggcaattcaggcacttcataaactt |
33167114 |
T |
|
| Q |
407 |
tgtcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatccatatgttcaccagttcctat |
506 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
33167115 |
tgtccataaactcggaccagtcacccatgcctaatagacgactaacaaacgacttaacttcaaaagcttcaaactcatccatatgttcaccggttgctat |
33167214 |
T |
|
| Q |
507 |
gaatatgac |
515 |
Q |
| |
|
||||||||| |
|
|
| T |
33167215 |
gaatatgac |
33167223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 44827275 - 44827196
Alignment:
| Q |
436 |
cctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatccatatgttcaccagttcctatgaatatgac |
515 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44827275 |
cctaatagacgactaacaaacggctgaacttcaaatacttcaaactgatccatatgttcaccagttcctatgaatatgac |
44827196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 44835129 - 44834933
Alignment:
| Q |
117 |
gatttaggattaaaggttgctagcagaatcaacaatagcatttattattcaaaagatgcaaatgttg-----agagctacatgtgtctctagagaacaac |
211 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||| ||||| ||||||| ||| |||||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
44835129 |
gatttaggatgaaaggttgctagcggagtcaacaaaagcatccgttattcaggagaagcaaatgttgcagcaagagctagatgtggct--agagaacaac |
44835032 |
T |
|
| Q |
212 |
ttaagcacttgcagaaat-tcagtatgagtttgggattaattcagt-----atgtgaagttgctaataaaggaaatgaaatcccttagaaggtctcagt |
304 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| ||| || ||| || ||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
44835031 |
ttaagcacttgcagaaacatcatgatgagtttgagatgaaatcaaagacagatatgaagttgctagtaaaggaagtgaaatcccttagaagctctcagt |
44834933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 515
Target Start/End: Original strand, 2203176 - 2203255
Alignment:
| Q |
436 |
cctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatccatatgttcaccagttcctatgaatatgac |
515 |
Q |
| |
|
||||||||| ||| ||||| || ||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
2203176 |
cctaatagacgactgacaaatggtttaacatcaaaaacttcaaattcatccatgtgttctccagttccaatgaatatgac |
2203255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University