View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_66 (Length: 237)

Name: NF3879_low_66
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_66
NF3879_low_66
[»] chr1 (9 HSPs)
chr1 (1-222)||(5031585-5031806)
chr1 (1-71)||(17983258-17983328)
chr1 (1-71)||(20607548-20607618)
chr1 (4-70)||(5757798-5757864)
chr1 (4-69)||(3820312-3820377)
chr1 (1-69)||(41985251-41985319)
chr1 (4-66)||(6073248-6073310)
chr1 (1-71)||(20610819-20610889)
chr1 (1-69)||(41987968-41988036)
[»] chr7 (7 HSPs)
chr7 (1-77)||(28040457-28040533)
chr7 (1-71)||(33171122-33171192)
chr7 (1-71)||(44206096-44206166)
chr7 (4-71)||(23260674-23260741)
chr7 (1-71)||(31516559-31516629)
chr7 (4-70)||(39796758-39796824)
chr7 (4-69)||(38538910-38538975)
[»] chr8 (6 HSPs)
chr8 (1-71)||(43731587-43731657)
chr8 (1-71)||(43748333-43748403)
chr8 (4-71)||(9944029-9944096)
chr8 (4-70)||(18364532-18364598)
chr8 (4-70)||(35929245-35929311)
chr8 (4-69)||(27547174-27547239)
[»] chr3 (10 HSPs)
chr3 (1-71)||(31604695-31604765)
chr3 (4-71)||(39623999-39624066)
chr3 (4-71)||(41665437-41665504)
chr3 (4-70)||(48394389-48394455)
chr3 (1-70)||(27481711-27481780)
chr3 (4-69)||(52044101-52044166)
chr3 (4-71)||(39918630-39918697)
chr3 (4-71)||(47667114-47667181)
chr3 (4-71)||(48402442-48402509)
chr3 (7-54)||(48413993-48414040)
[»] chr2 (4 HSPs)
chr2 (1-71)||(27282666-27282736)
chr2 (1-70)||(36047048-36047117)
chr2 (1-70)||(36048279-36048348)
chr2 (1-70)||(44206819-44206888)
[»] chr5 (4 HSPs)
chr5 (1-70)||(32684983-32685052)
chr5 (4-70)||(8880743-8880809)
chr5 (1-71)||(20190349-20190419)
chr5 (1-71)||(20200377-20200447)
[»] chr4 (1 HSPs)
chr4 (4-70)||(24267493-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-71)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (20-52)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5031806 - 5031585
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttctatgtccacttggtcgtataaagtttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||  |  |||||    
T  5031806 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttctgtgtcttcttggtcgtaatatatttaa 5031707  T
Q  101 atattcattcatttttctgtgatgcatacttcgtgcacaacaattttttaattcaaatgctactagtttgagatagtgttgatgtttattttagagatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031706 atattcattcatttttctgtgatgcatacttcgtgcacaacaattttttaattcaaatgctactagtttgagatagtgttgatgtttattttagagatta 5031607  T
Q  201 attgtaactacatcaacttact 222  Q
    |||||||||||| ||| |||||    
T  5031606 attgtaactacaacaagttact 5031585  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17983328 - 17983258
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983328 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 17983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20607618 - 20607548
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607618 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 20607548  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 5757864 - 5757798
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757864 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5757798  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 3820312 - 3820377
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820312 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41985319 - 41985251
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985319 cgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 6073248 - 6073310
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 66  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6073248 tgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaac 6073310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20610889 - 20610819
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  20610889 cgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaactt 20610819  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41988036 - 41987968
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988036 cgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28040457 - 28040533
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttctatgt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28040457 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttcaatgt 28040533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33171192 - 33171122
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171192 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 33171122  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44206166 - 44206096
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206166 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 44206096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 23260741 - 23260674
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260741 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 23260674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31516629 - 31516559
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31516629 cgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 39796758 - 39796824
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796758 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39796824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 38538975 - 38538910
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538975 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43731587 - 43731657
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43731587 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43731657  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43748333 - 43748403
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748333 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 43748403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 9944029 - 9944096
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944029 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 9944096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 18364598 - 18364532
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364598 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 35929311 - 35929245
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929311 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 27547239 - 27547174
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547239 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31604765 - 31604695
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604765 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 31604695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39623999 - 39624066
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623999 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 39624066  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 41665437 - 41665504
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665437 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 41665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 48394389 - 48394455
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394389 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 48394455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27481711 - 27481780
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27481711 cgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgact 27481780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 52044166 - 52044101
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044166 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39918630 - 39918697
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39918630 tgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaactt 39918697  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 47667114 - 47667181
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  47667114 tgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgactt 47667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 48402442 - 48402509
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48402442 tgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaactt 48402509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  7 cggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 54  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27282666 - 27282736
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282666 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 27282736  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36047117 - 36047048
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047117 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36048348 - 36048279
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048348 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44206888 - 44206819
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206888 cgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 44206819  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32685052 - 32684983
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685052 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 32684983  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 8880809 - 8880743
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880809 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 8880743  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20190349 - 20190419
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20190349 cgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgactt 20190419  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20200377 - 20200447
Alignment:
Q  1 cgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    ||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20200377 cgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgactt 20200447  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 24267493 - 24267559
Alignment:
Q  4 tgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 70  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24267493 tgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgact 24267559  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 184994 - 184931
Alignment:
Q  8 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 71  Q
    |||||| |||||||| |||||||| ||||||  || ||||||||||||||||||||||| ||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaactt 184931  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  20 cgggtcacccgcgtgacaggcgggaatacttac 52  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

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