View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_7 (Length: 521)
Name: NF3879_low_7
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 24 - 511
Target Start/End: Complemental strand, 52807354 - 52806867
Alignment:
| Q |
24 |
acaagaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactctttaa |
123 |
Q |
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| T |
52807354 |
acaagaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactctttaa |
52807255 |
T |
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| Q |
124 |
gctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgtatatat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807254 |
gctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgtatatat |
52807155 |
T |
|
| Q |
224 |
caagtgatgcgctcaggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807154 |
caagtgatgcgctcaggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtc |
52807055 |
T |
|
| Q |
324 |
atccacaagtcactcctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagagcttgtcttaagtctcatcagcctcaccatca |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52807054 |
atccacaagtcactcctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagggcttgtcttaagtctcatcagcctcaccatca |
52806955 |
T |
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| Q |
424 |
aacttcacaacatccacttcaatctagagctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttg |
511 |
Q |
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| T |
52806954 |
aacttcacaacatccacttcaatctagggctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttg |
52806867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 16611234 - 16611286
Alignment:
| Q |
434 |
catccacttcaatctagagctcttgagctttgtttcaatgtagctcttaatag |
486 |
Q |
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||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| |
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| T |
16611234 |
catcctcttcaatgtagagctcttgaactttgcttcaatgttgctcttaatag |
16611286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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